Variant report

Variant	rs17662629
Chromosome Location	chr7:48528081-48528082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10227179	0.82[MEX][hapmap];0.83[AMR][1000 genomes]
rs10227187	0.83[AMR][1000 genomes]
rs10237159	0.83[AMR][1000 genomes]
rs10237473	0.92[AMR][1000 genomes]
rs10239675	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10249009	0.91[MEX][hapmap];0.92[AMR][1000 genomes]
rs10249279	0.86[AMR][1000 genomes]
rs10251517	0.86[MEX][hapmap];0.85[AMR][1000 genomes]
rs10255612	0.86[MEX][hapmap];0.86[AMR][1000 genomes]
rs10256255	0.82[MEX][hapmap];0.83[AMR][1000 genomes]
rs10267753	0.82[MEX][hapmap];0.83[AMR][1000 genomes]
rs10268515	0.83[AMR][1000 genomes]
rs10273407	0.87[MEX][hapmap];0.87[AMR][1000 genomes]
rs10276131	0.86[AMR][1000 genomes]
rs10276989	0.83[AMR][1000 genomes]
rs10277088	0.87[AMR][1000 genomes]
rs10280481	0.82[MEX][hapmap];0.82[AMR][1000 genomes]
rs10282413	0.87[AMR][1000 genomes]
rs11760636	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11762388	0.91[MEX][hapmap];0.92[AMR][1000 genomes]
rs11765607	0.92[AMR][1000 genomes]
rs11766842	0.85[AMR][1000 genomes]
rs11771470	0.86[AMR][1000 genomes]
rs11772033	0.92[AMR][1000 genomes]
rs11981491	0.92[AMR][1000 genomes]
rs12533158	0.85[AMR][1000 genomes]
rs12533748	0.83[AMR][1000 genomes]
rs12535273	0.86[AMR][1000 genomes]
rs12537664	0.86[AMR][1000 genomes]
rs12540368	0.91[MEX][hapmap];0.86[AMR][1000 genomes]
rs1433499	0.83[AMR][1000 genomes]
rs1433500	0.83[AMR][1000 genomes]
rs1534393	0.82[MEX][hapmap]
rs17132342	0.82[AMR][1000 genomes]
rs17132359	0.85[AMR][1000 genomes]
rs17662893	0.87[AMR][1000 genomes]
rs17663162	0.85[CHB][hapmap]
rs17730186	0.92[AMR][1000 genomes]
rs17730341	0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17730353	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1836092	0.83[AMR][1000 genomes]
rs1881077	0.87[AMR][1000 genomes]
rs1881079	0.83[AMR][1000 genomes]
rs1881080	0.82[AMR][1000 genomes]
rs1918579	0.92[AMR][1000 genomes]
rs2043391	0.83[AMR][1000 genomes]
rs2043392	0.83[AMR][1000 genomes]
rs2043393	0.83[AMR][1000 genomes]
rs2043394	0.83[AMR][1000 genomes]
rs2885482	0.83[AMR][1000 genomes]
rs35345934	0.83[AMR][1000 genomes]
rs4022347	0.92[AMR][1000 genomes]
rs4144065	0.87[MEX][hapmap];0.92[AMR][1000 genomes]
rs4256548	0.83[AMR][1000 genomes]
rs4621756	0.83[AMR][1000 genomes]
rs4623358	0.83[AMR][1000 genomes]
rs4642585	0.83[AMR][1000 genomes]
rs4917019	0.83[AMR][1000 genomes]
rs4917020	0.85[AMR][1000 genomes]
rs4917021	0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4917140	0.83[AMR][1000 genomes]
rs4917141	0.82[MEX][hapmap];0.83[AMR][1000 genomes]
rs4917142	0.81[MEX][hapmap];0.83[AMR][1000 genomes]
rs4917143	0.82[MEX][hapmap];0.83[AMR][1000 genomes]
rs4917144	0.83[AMR][1000 genomes]
rs4917145	0.82[MEX][hapmap];0.83[AMR][1000 genomes]
rs4917146	0.83[AMR][1000 genomes]
rs4917147	0.85[AMR][1000 genomes]
rs4917148	0.87[AMR][1000 genomes]
rs4917149	0.85[AMR][1000 genomes]
rs4917152	0.86[MEX][hapmap];0.85[AMR][1000 genomes]
rs4917153	0.86[MEX][hapmap];0.85[AMR][1000 genomes]
rs4917154	0.82[MEX][hapmap];0.85[AMR][1000 genomes]
rs4917155	0.85[AMR][1000 genomes]
rs4917160	0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56326742	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56395407	0.87[AMR][1000 genomes]
rs59915104	0.92[AMR][1000 genomes]
rs6583447	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs67312973	0.86[AMR][1000 genomes]
rs67563133	0.86[AMR][1000 genomes]
rs73105511	0.82[AMR][1000 genomes]
rs73107511	0.87[AMR][1000 genomes]
rs73107532	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73107543	0.92[AMR][1000 genomes]
rs73111420	0.85[AMR][1000 genomes]
rs735069	0.83[AMR][1000 genomes]
rs735070	0.83[AMR][1000 genomes]
rs7782619	0.85[AMR][1000 genomes]
rs7789206	0.85[AMR][1000 genomes]
rs7799302	0.87[AMR][1000 genomes]
rs7808037	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817336	chr7:48238233-48563988	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1022980	chr7:48243227-48567060	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538833	chr7:48243227-48567060	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1022578	chr7:48244414-48584664	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1023575	chr7:48244414-48586685	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1015183	chr7:48244414-48588598	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1032221	chr7:48302789-48546684	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1015399	chr7:48321542-48544359	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2761325	chr7:48409639-48557382	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv888007	chr7:48467581-48533508	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48511600-48554400	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr7:48520800-48536000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:48523800-48574000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:48527400-48529200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:48527600-48529200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:48527600-48529200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:48527600-48529400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:48528000-48529000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:48528000-48529400	Enhancers	HUES48 Cell Line	embryonic stem cell

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