Variant report

Variant	rs17663037
Chromosome Location	chr5:151582105-151582106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151580655..151582436-chr5:151582503..151585024,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11950895	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11951018	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11951697	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12515700	0.89[ASN][1000 genomes]
rs12717855	0.96[ASN][1000 genomes]
rs13163589	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13174082	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13182827	0.90[ASN][1000 genomes]
rs1366608	1.00[ASN][1000 genomes]
rs1376640	1.00[ASN][1000 genomes]
rs17663169	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1864198	1.00[ASN][1000 genomes]
rs2112694	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2112695	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34789586	0.89[ASN][1000 genomes]
rs6579922	0.89[ASN][1000 genomes]
rs6870899	1.00[ASN][1000 genomes]
rs6878435	0.89[ASN][1000 genomes]
rs6888966	0.86[ASN][1000 genomes]
rs7722799	0.89[ASN][1000 genomes]
rs7724185	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv5073	chr5:151551846-151597040	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3470760	chr5:151580840-151583896	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3470762	chr5:151580840-151583896	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv513270	chr5:151580851-151584388	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3470761	chr5:151580864-151583896	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv515540	chr5:151581680-151582211	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151581600-151582400	Enhancers	Pancreatic Islets	Pancreatic Islet

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