Variant report

Variant	rs17663317
Chromosome Location	chr5:98098351-98098352
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98097815..98101035-chr5:98108800..98111033,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174136	Chromatin interaction
ENSG00000246763	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10515284	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11948998	0.90[CEU][hapmap]
rs11953096	0.90[CEU][hapmap]
rs11956636	1.00[CEU][hapmap]
rs11958835	0.90[CEU][hapmap]
rs161742	0.90[CEU][hapmap]
rs17166262	0.81[EUR][1000 genomes]
rs17166414	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17166423	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17166428	1.00[CEU][hapmap]
rs17166439	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs17166455	1.00[CEU][hapmap]
rs17821701	0.90[CEU][hapmap]
rs2164986	0.80[EUR][1000 genomes]
rs2963709	0.90[CEU][hapmap]
rs3179904	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs36011435	0.80[EUR][1000 genomes]
rs56232429	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56331326	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56400831	0.80[EUR][1000 genomes]
rs6866527	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs6866629	0.90[CEU][hapmap]
rs6880120	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6893282	0.89[CEU][hapmap]
rs727637	1.00[CEU][hapmap]
rs7705786	0.89[EUR][1000 genomes]
rs7732391	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3469594	chr5:98089607-98098682	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	esv3469595	chr5:98089797-98098555	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv3469597	chr5:98089849-98098525	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	esv3469598	chr5:98089861-98098516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	esv3469593	chr5:98089868-98098496	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3469599	chr5:98089932-98098452	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	esv19382	chr5:98089979-98098453	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98089600-98104000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:98090200-98099000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:98097400-98103200	Weak transcription	HSMMtube	muscle
4	chr5:98098200-98101000	Enhancers	NHDF-Ad	bronchial

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