Variant report

Variant	rs17665537
Chromosome Location	chr8:50214032-50214033
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:50201423..50204477-chr8:50211622..50215340,4	K562	blood:
2	chr8:50201423..50203830-chr8:50212097..50214084,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10108796	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10957379	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10957380	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11785478	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11987140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11992066	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12674890	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1842401	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2170190	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4355782	0.80[ASN][1000 genomes]
rs55896231	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55904037	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56336550	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56368009	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58718013	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7013102	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72643127	0.80[ASN][1000 genomes]
rs72643128	0.80[ASN][1000 genomes]
rs72643129	0.80[ASN][1000 genomes]
rs72643150	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72643182	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72643185	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72643186	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72643199	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72644404	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72644405	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72644431	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72644448	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830889	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1034908	chr8:50023423-50416049	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv539601	chr8:50023423-50416049	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1024410	chr8:50037085-50511501	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv428517	chr8:50094920-50232993	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv890855	chr8:50109365-50252962	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv890856	chr8:50133485-50272497	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv890857	chr8:50133485-50469764	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50207400-50214600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr8:50213200-50214600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:50213800-50219600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:50214000-50214400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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