Variant report

Variant	rs17665806
Chromosome Location	chr18:30302283-30302284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1039142	0.81[EUR][1000 genomes]
rs1039143	0.81[EUR][1000 genomes]
rs10502605	0.82[EUR][1000 genomes]
rs10502606	0.81[EUR][1000 genomes]
rs10502607	0.81[EUR][1000 genomes]
rs12454261	0.80[EUR][1000 genomes]
rs12454337	0.80[EUR][1000 genomes]
rs12454409	0.80[EUR][1000 genomes]
rs12456916	0.80[EUR][1000 genomes]
rs12456996	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12457924	0.80[EUR][1000 genomes]
rs12457977	0.80[EUR][1000 genomes]
rs12953998	0.81[EUR][1000 genomes]
rs12954299	0.81[EUR][1000 genomes]
rs12956370	0.81[EUR][1000 genomes]
rs12956427	0.80[EUR][1000 genomes]
rs12957691	0.81[EUR][1000 genomes]
rs12959986	0.86[EUR][1000 genomes]
rs12960282	0.85[EUR][1000 genomes]
rs12961920	0.81[EUR][1000 genomes]
rs12964622	0.83[AFR][1000 genomes]
rs12967142	0.81[EUR][1000 genomes]
rs12967667	0.81[EUR][1000 genomes]
rs12967862	0.86[EUR][1000 genomes]
rs12968405	0.85[EUR][1000 genomes]
rs12968480	0.80[EUR][1000 genomes]
rs12969530	0.81[EUR][1000 genomes]
rs12969799	0.80[EUR][1000 genomes]
rs12970312	0.80[EUR][1000 genomes]
rs12970723	0.81[EUR][1000 genomes]
rs1357535	0.81[EUR][1000 genomes]
rs1357536	0.81[EUR][1000 genomes]
rs1357538	0.81[EUR][1000 genomes]
rs1403760	0.81[EUR][1000 genomes]
rs1403761	0.81[EUR][1000 genomes]
rs1403762	0.81[EUR][1000 genomes]
rs1523579	0.85[EUR][1000 genomes]
rs1523591	0.80[EUR][1000 genomes]
rs1523592	0.81[EUR][1000 genomes]
rs17665504	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17665516	0.83[EUR][1000 genomes]
rs17665734	0.80[EUR][1000 genomes]
rs1851700	0.81[EUR][1000 genomes]
rs2030622	0.81[EUR][1000 genomes]
rs2049335	0.81[EUR][1000 genomes]
rs2049336	0.81[EUR][1000 genomes]
rs2132819	0.80[EUR][1000 genomes]
rs2140447	0.81[EUR][1000 genomes]
rs2140448	0.80[EUR][1000 genomes]
rs2140449	0.81[EUR][1000 genomes]
rs2173180	0.81[EUR][1000 genomes]
rs4597394	0.85[EUR][1000 genomes]
rs6506982	0.80[EUR][1000 genomes]
rs6506983	0.81[EUR][1000 genomes]
rs6506984	0.81[EUR][1000 genomes]
rs6506985	0.81[EUR][1000 genomes]
rs6506986	0.80[EUR][1000 genomes]
rs7230048	0.80[EUR][1000 genomes]
rs7230052	0.81[EUR][1000 genomes]
rs7230438	0.81[EUR][1000 genomes]
rs7230625	0.81[EUR][1000 genomes]
rs7232695	0.80[EUR][1000 genomes]
rs7233463	0.80[EUR][1000 genomes]
rs7234772	0.81[EUR][1000 genomes]
rs7237843	0.80[EUR][1000 genomes]
rs8083192	0.81[EUR][1000 genomes]
rs8098984	0.81[EUR][1000 genomes]
rs8099131	0.81[EUR][1000 genomes]
rs8099133	0.81[EUR][1000 genomes]
rs8099299	0.80[EUR][1000 genomes]
rs9945156	0.81[EUR][1000 genomes]
rs9946664	0.81[EUR][1000 genomes]
rs9951265	0.81[EUR][1000 genomes]
rs9952882	0.81[EUR][1000 genomes]
rs9953014	0.81[EUR][1000 genomes]
rs9953107	0.81[EUR][1000 genomes]
rs9953121	0.81[EUR][1000 genomes]
rs9953954	0.81[EUR][1000 genomes]
rs9954988	0.81[EUR][1000 genomes]
rs9954999	0.81[EUR][1000 genomes]
rs9955000	0.81[EUR][1000 genomes]
rs9955063	0.80[EUR][1000 genomes]
rs9957809	0.81[EUR][1000 genomes]
rs9957814	0.81[EUR][1000 genomes]
rs9962132	0.81[EUR][1000 genomes]
rs9965787	0.82[EUR][1000 genomes]
rs9965869	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060732	chr18:30267156-30304435	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1062187	chr18:30267156-30306081	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1056335	chr18:30267904-30305840	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1059928	chr18:30267904-30306081	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1062522	chr18:30268383-30306081	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1057063	chr18:30280311-30304435	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1065587	chr18:30280311-30306081	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1067005	chr18:30290885-30304435	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1066471	chr18:30290885-30305840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1062670	chr18:30290885-30306081	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv998622	chr18:30293281-30304579	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30294800-30306800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr18:30299600-30305800	Strong transcription	Primary B cells from cord blood	blood
3	chr18:30301200-30307800	Weak transcription	HepG2	liver
4	chr18:30301400-30304800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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