Variant report

Variant	rs17672376
Chromosome Location	chr14:55707363-55707364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55706045..55707823-chr14:55736335..55738127,2	K562	blood:
2	chr14:55705409..55707823-chr14:55736627..55738832,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DLGAP5-5	chr14:55707340-55707798	NONHSAT036994

Variant related genes	Relation type
ENSG00000258413	Chromatin interaction
ENSG00000178974	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10140881	0.80[EUR][1000 genomes]
rs10483641	0.89[CEU][hapmap]
rs10498475	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11125	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11844443	0.80[EUR][1000 genomes]
rs17128143	1.00[CHD][hapmap]
rs17128484	0.82[CEU][hapmap]
rs17671923	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17672950	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17673930	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17675052	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17740413	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17741681	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17741825	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17742621	0.80[CEU][hapmap];1.00[CHD][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap];1.00[ASN][1000 genomes]
rs17743484	0.89[CEU][hapmap];1.00[CHD][hapmap]
rs17851309	1.00[CHD][hapmap]
rs1959443	0.89[CEU][hapmap];1.00[CHD][hapmap]
rs2274271	0.89[CEU][hapmap]
rs28547246	0.80[EUR][1000 genomes]
rs28676392	0.80[EUR][1000 genomes]
rs35070799	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41299199	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs45513892	1.00[AFR][1000 genomes]
rs60505634	1.00[ASN][1000 genomes]
rs6573008	0.80[CEU][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs713473	0.89[CEU][hapmap];1.00[CHD][hapmap]
rs713475	0.89[CEU][hapmap];1.00[CHD][hapmap]
rs7141706	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7159490	0.89[CEU][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs7160411	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs72717745	1.00[ASN][1000 genomes]
rs72717751	1.00[ASN][1000 genomes]
rs72717752	1.00[ASN][1000 genomes]
rs72717759	1.00[ASN][1000 genomes]
rs8003961	0.80[EUR][1000 genomes]
rs8012105	0.80[EUR][1000 genomes]
rs8012397	1.00[CEU][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17672376	FBXO34	cis	cerebellum	SCAN
rs17672376	L2HGDH	cis	cerebellum	SCAN
rs17672376	MAPK1IP1L	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55707200-55707400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
2	chr14:55707200-55707600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr14:55707200-55707600	Bivalent Enhancer	NHDF-Ad	bronchial

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