Variant report

Variant	rs17677566
Chromosome Location	chr12:63139188-63139189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:62996091..62998730-chr12:63137712..63141032,3	MCF-7	breast:
2	chr12:63131148..63134092-chr12:63139038..63140711,2	K562	blood:
3	chr12:62995848..62997419-chr12:63137887..63139415,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257354	Chromatin interaction
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61921160	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7135080	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802580	chr12:63139188-63157591	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63096600-63157000	Weak transcription	Pancreas	Pancrea
2	chr12:63123000-63152000	Weak transcription	Gastric	stomach
3	chr12:63124200-63145400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr12:63125800-63143000	Weak transcription	Psoas Muscle	Psoas
5	chr12:63126000-63149200	Weak transcription	Lung	lung
6	chr12:63126200-63155600	Weak transcription	Aorta	Aorta
7	chr12:63130200-63153200	Weak transcription	Fetal Intestine Large	intestine
8	chr12:63131400-63148000	Weak transcription	Fetal Intestine Small	intestine
9	chr12:63132600-63140600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr12:63132600-63145400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr12:63133600-63144800	Weak transcription	Brain Anterior Caudate	brain
12	chr12:63133800-63143000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr12:63134200-63145000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr12:63134200-63150600	Weak transcription	Right Atrium	heart
15	chr12:63134400-63139200	Weak transcription	Thymus	Thymus
16	chr12:63134400-63141400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr12:63134400-63144600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr12:63134400-63160600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr12:63135000-63142200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr12:63135600-63145000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr12:63136000-63142600	Weak transcription	Brain Angular Gyrus	brain
22	chr12:63136000-63145000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr12:63136400-63144600	Weak transcription	Brain Substantia Nigra	brain
24	chr12:63137400-63139800	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr12:63137800-63140400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr12:63138200-63139400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr12:63138200-63139600	Enhancers	Osteobl	bone
28	chr12:63138200-63139800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr12:63138200-63139800	Enhancers	Muscle Satellite Cultured Cells	--
30	chr12:63138200-63140200	Enhancers	GM12878-XiMat	blood
31	chr12:63138400-63139200	Enhancers	Primary B cells from cord blood	blood
32	chr12:63138400-63139400	Enhancers	Left Ventricle	heart
33	chr12:63138400-63139400	Enhancers	NHDF-Ad	bronchial
34	chr12:63138400-63139800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr12:63138400-63139800	Enhancers	A549	lung
36	chr12:63138400-63140000	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr12:63138400-63140000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr12:63138600-63139400	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr12:63138600-63139400	Enhancers	Primary B cells from peripheral blood	blood
40	chr12:63138600-63139400	Enhancers	HUVEC	blood vessel
41	chr12:63138600-63139400	Enhancers	NHLF	lung
42	chr12:63138600-63139800	Enhancers	Fetal Thymus	thymus
43	chr12:63138600-63139800	Enhancers	HSMM	muscle
44	chr12:63138600-63141800	Strong transcription	HepG2	liver
45	chr12:63138800-63139200	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr12:63138800-63139600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr12:63138800-63139600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr12:63138800-63140200	Weak transcription	Esophagus	oesophagus
49	chr12:63138800-63142400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr12:63138800-63149200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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