Variant report

Variant	rs17679272
Chromosome Location	chr1:216875154-216875155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11117658	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11572706	0.83[GIH][hapmap]
rs11580756	0.82[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1339343	0.83[CEU][hapmap];0.85[GIH][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs1416620	0.82[ASW][hapmap];0.85[MEX][hapmap]
rs17627954	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35399012	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4259728	0.82[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216868200-216894000	Weak transcription	Placenta	Placenta
2	chr1:216873200-216875400	Enhancers	Fetal Heart	heart
3	chr1:216873600-216875200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr1:216874400-216875200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:216874400-216875400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:216874400-216879400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:216874600-216875200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:216874800-216875200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:216874800-216878800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr1:216874800-216879000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:216875000-216878800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr1:216875000-216879000	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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