Variant report

Variant	rs17679286
Chromosome Location	chr6:12828434-12828435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1011188	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10434855	0.91[EUR][1000 genomes]
rs10498681	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12525116	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12525210	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12526812	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12528247	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12528721	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1332842	0.83[EUR][1000 genomes]
rs1571996	0.91[EUR][1000 genomes]
rs1572001	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17616767	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17617491	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17617584	1.00[CEU][hapmap]
rs17678734	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2015761	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2151221	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2876298	0.91[EUR][1000 genomes]
rs35278288	0.91[EUR][1000 genomes]
rs4285318	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4293998	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4577783	0.91[EUR][1000 genomes]
rs4583985	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4711817	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4711856	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4714931	0.91[EUR][1000 genomes]
rs55764622	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55879442	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56244510	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56259669	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56270763	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58666803	0.86[EUR][1000 genomes]
rs60954427	0.86[EUR][1000 genomes]
rs6915585	0.91[EUR][1000 genomes]
rs73722820	0.91[EUR][1000 genomes]
rs73722822	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73722823	0.91[EUR][1000 genomes]
rs73722845	0.86[EUR][1000 genomes]
rs73722849	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7768030	0.91[EUR][1000 genomes]
rs9369607	0.91[EUR][1000 genomes]
rs9369612	0.91[EUR][1000 genomes]
rs9381451	0.87[EUR][1000 genomes]
rs9463091	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9463093	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs9463105	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9463114	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9463117	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9463119	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9463140	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9472484	0.89[EUR][1000 genomes]
rs9472511	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9472512	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9472513	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9472514	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9472519	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9472520	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9472528	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9472549	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9472566	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs950719	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12826000-12830400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:12827600-12832800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:12828400-12832200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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