Variant report

Variant	rs17694300
Chromosome Location	chr9:26904901-26904902
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26904433..26907115-chr9:26907974..26909867,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10283643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511793	1.00[CHB][hapmap]
rs10812492	1.00[CHB][hapmap]
rs10812500	1.00[CHB][hapmap]
rs10967593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10967594	1.00[CHB][hapmap]
rs10967595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10967624	1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10967625	1.00[CHB][hapmap]
rs10967634	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10967638	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10967639	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10967640	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10967644	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1161603	1.00[CHB][hapmap]
rs11999015	1.00[ASN][1000 genomes]
rs12001845	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12002068	1.00[ASN][1000 genomes]
rs12003612	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12338678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338827	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12339063	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12342005	1.00[CHB][hapmap]
rs12345094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12349359	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12352441	1.00[CHB][hapmap]
rs16910755	1.00[AMR][1000 genomes]
rs16910832	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16910834	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16910888	1.00[CHB][hapmap]
rs16910895	1.00[CHB][hapmap]
rs17694121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17755398	1.00[AMR][1000 genomes]
rs17755820	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17755887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17755911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17756221	1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs17760378	1.00[JPT][hapmap]
rs2152063	1.00[CHB][hapmap]
rs2991949	1.00[CHB][hapmap]
rs3429	1.00[CHB][hapmap]
rs41271173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41272237	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41272239	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55902149	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59478807	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs596427	1.00[CHB][hapmap]
rs59757728	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61331313	1.00[ASN][1000 genomes]
rs615532	1.00[CHB][hapmap]
rs6475948	1.00[CHB][hapmap]
rs7037860	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7039400	1.00[CHB][hapmap]
rs7040516	1.00[CHB][hapmap]
rs73433963	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73643117	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73643119	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73643120	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73643125	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7871097	1.00[CHB][hapmap]
rs7871286	1.00[CHB][hapmap]
rs892570	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26892800-26916200	Weak transcription	Small Intestine	intestine
2	chr9:26893000-26905600	Weak transcription	Lung	lung
3	chr9:26893000-26916000	Weak transcription	Left Ventricle	heart
4	chr9:26893000-26916000	Weak transcription	Pancreas	Pancrea
5	chr9:26893000-26916200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:26893000-26922600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:26893000-26924200	Weak transcription	Esophagus	oesophagus
8	chr9:26893200-26905600	Weak transcription	Ovary	ovary
9	chr9:26893200-26923200	Weak transcription	Right Ventricle	heart
10	chr9:26893400-26905200	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:26893400-26905200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:26893400-26905400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:26893400-26905400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr9:26893400-26905400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:26893400-26905400	Weak transcription	NHDF-Ad	bronchial
16	chr9:26893400-26905600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr9:26893400-26905800	Weak transcription	Fetal Stomach	stomach
18	chr9:26893400-26914800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:26893400-26916000	Weak transcription	Fetal Lung	lung
20	chr9:26893400-26916800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:26893400-26925000	Weak transcription	Stomach Mucosa	stomach
22	chr9:26893400-26936400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr9:26893400-26936400	Weak transcription	Psoas Muscle	Psoas
24	chr9:26893600-26905200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:26893600-26905200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr9:26893600-26905200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:26893600-26905200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr9:26893600-26905400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr9:26893600-26905400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr9:26893600-26905400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr9:26893600-26905400	Weak transcription	Osteobl	bone
32	chr9:26893600-26905600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr9:26893600-26905600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr9:26893600-26905600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr9:26893600-26905600	Weak transcription	Thymus	Thymus
36	chr9:26893600-26906600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr9:26893600-26907600	Weak transcription	NHLF	lung
38	chr9:26893600-26912200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr9:26893600-26912400	Weak transcription	Brain Germinal Matrix	brain
40	chr9:26893600-26915400	Weak transcription	Fetal Brain Female	brain
41	chr9:26893600-26915600	Weak transcription	Fetal Kidney	kidney
42	chr9:26893600-26915800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:26893600-26916000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr9:26893600-26916000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr9:26893600-26916000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr9:26893800-26905000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr9:26893800-26905200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr9:26893800-26905400	Weak transcription	HMEC	breast
49	chr9:26893800-26905600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr9:26894800-26905400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links