Variant report
| Variant | rs1770212 |
|---|---|
| Chromosome Location | chr1:210939266-210939267 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10863854 | 0.83[ASN][1000 genomes] |
| rs11119588 | 0.84[ASN][1000 genomes] |
| rs11119589 | 0.85[ASN][1000 genomes] |
| rs1114880 | 0.90[ASN][1000 genomes] |
| rs12022273 | 0.87[ASN][1000 genomes] |
| rs12022312 | 0.87[ASN][1000 genomes] |
| rs12040025 | 0.82[ASN][1000 genomes] |
| rs1317255 | 0.83[ASN][1000 genomes] |
| rs1340127 | 0.82[ASN][1000 genomes] |
| rs1340128 | 0.93[ASN][1000 genomes] |
| rs1770214 | 0.91[ASN][1000 genomes] |
| rs1770215 | 0.88[ASN][1000 genomes] |
| rs1777244 | 0.91[ASN][1000 genomes] |
| rs1777252 | 0.90[ASN][1000 genomes] |
| rs1777254 | 0.88[ASN][1000 genomes] |
| rs1777255 | 0.89[ASN][1000 genomes] |
| rs1777256 | 0.87[ASN][1000 genomes] |
| rs1777257 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1777263 | 0.94[ASN][1000 genomes] |
| rs1934632 | 0.83[ASN][1000 genomes] |
| rs1934633 | 0.84[ASN][1000 genomes] |
| rs9429845 | 0.83[ASN][1000 genomes] |
| rs9429848 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv873148 | chr1:210665583-210994339 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv873153 | chr1:210900481-210994339 | Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv999018 | chr1:210907239-210999306 | Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:210938600-210943000 | Weak transcription | HSMMtube | muscle |
| 2 | chr1:210938600-210943800 | Weak transcription | HSMM | muscle |
