Variant report

Variant	rs17706535
Chromosome Location	chr13:76335109-76335110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76334449..76335189-chr15:65588194..65588821,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000199568	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13378674	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17706332	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2275589	1.00[LWK][hapmap]
rs9593124	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832646	chr13:76300428-76483102	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2758333	chr13:76321610-76542003	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv2759950	chr13:76321610-76542003	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76308200-76345200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:76323800-76336600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr13:76323800-76356600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:76324000-76335200	Weak transcription	NH-A	brain
5	chr13:76325200-76335200	Weak transcription	Ovary	ovary
6	chr13:76329200-76335600	Weak transcription	Primary B cells from cord blood	blood
7	chr13:76332000-76336600	Weak transcription	Small Intestine	intestine
8	chr13:76333600-76338800	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr13:76333800-76335400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:76333800-76337800	Active TSS	Rectal Smooth Muscle	rectum
11	chr13:76334000-76335600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr13:76334000-76336600	Weak transcription	Gastric	stomach
13	chr13:76334200-76335600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr13:76334200-76338200	Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr13:76334200-76338400	Active TSS	Duodenum Mucosa	Duodenum
16	chr13:76334400-76335200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr13:76334400-76335200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr13:76334400-76335200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr13:76334400-76335200	Weak transcription	Stomach Mucosa	stomach
20	chr13:76334400-76335200	Flanking Active TSS	HMEC	breast
21	chr13:76334400-76335200	Flanking Active TSS	NHEK	skin
22	chr13:76334400-76335400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
23	chr13:76334400-76335800	Active TSS	Fetal Muscle Trunk	muscle
24	chr13:76334400-76336600	Active TSS	Fetal Kidney	kidney
25	chr13:76334400-76337000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr13:76334400-76337200	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr13:76334400-76337400	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr13:76334400-76338200	Active TSS	Hela-S3	cervix
29	chr13:76334400-76338800	Active TSS	Right Ventricle	heart
30	chr13:76334400-76339600	Active TSS	Fetal Brain Female	brain
31	chr13:76334600-76335200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr13:76334600-76335200	Active TSS	Fetal Heart	heart
33	chr13:76334600-76335200	Flanking Active TSS	Fetal Thymus	thymus
34	chr13:76334600-76335400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr13:76334600-76335600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr13:76334600-76335600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
37	chr13:76334600-76337200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr13:76334600-76337200	Active TSS	Fetal Muscle Leg	muscle
39	chr13:76334600-76337200	Active TSS	Thymus	Thymus
40	chr13:76334600-76337600	Active TSS	A549	lung
41	chr13:76334600-76337800	Active TSS	Brain Anterior Caudate	brain
42	chr13:76334600-76337800	Active TSS	Psoas Muscle	Psoas
43	chr13:76334600-76338000	Active TSS	Fetal Stomach	stomach
44	chr13:76334600-76338200	Active TSS	Fetal Intestine Large	intestine
45	chr13:76334600-76338400	Active TSS	Fetal Intestine Small	intestine
46	chr13:76334800-76335200	Enhancers	NHDF-Ad	bronchial
47	chr13:76334800-76335400	Enhancers	HUVEC	blood vessel
48	chr13:76334800-76335800	Flanking Active TSS	GM12878-XiMat	blood
49	chr13:76334800-76336200	Active TSS	Placenta Amnion	Placenta Amnion
50	chr13:76334800-76336400	Enhancers	Primary B cells from peripheral blood	blood

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