Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12101294	1.00[EUR][1000 genomes]
rs12232305	0.82[ASN][1000 genomes]
rs16965222	0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs2120441	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2120443	1.00[EUR][1000 genomes]
rs2456509	0.91[ASN][1000 genomes]
rs2456510	0.88[ASN][1000 genomes]
rs28403097	1.00[EUR][1000 genomes]
rs28415452	0.93[ASN][1000 genomes]
rs28449533	0.97[ASN][1000 genomes]
rs28489650	0.82[ASN][1000 genomes]
rs28515720	1.00[EUR][1000 genomes]
rs28556805	0.91[ASN][1000 genomes]
rs28566485	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28624935	1.00[EUR][1000 genomes]
rs28713382	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56346629	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56710422	1.00[EUR][1000 genomes]
rs57094771	1.00[EUR][1000 genomes]
rs57960122	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58028943	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59569753	1.00[EUR][1000 genomes]
rs60407782	1.00[EUR][1000 genomes]
rs60882420	1.00[EUR][1000 genomes]
rs61364465	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6493586	0.90[ASN][1000 genomes]
rs7173312	1.00[EUR][1000 genomes]
rs7176412	0.80[CHD][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs731607	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1043999	chr15:53162917-53187508	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17709181	MYO5C	cis	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53164800-53165800	Enhancers	Pancreas	Pancrea

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