Variant report

Variant	rs17719092
Chromosome Location	chr10:50780493-50780494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1130028	0.87[EUR][1000 genomes]
rs11812473	0.85[EUR][1000 genomes]
rs11815156	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11819019	0.87[EUR][1000 genomes]
rs17010079	0.85[EUR][1000 genomes]
rs17775180	0.88[EUR][1000 genomes]
rs2228526	0.87[ASW][hapmap];1.00[CEU][hapmap];0.80[GIH][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs2228527	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[GIH][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs2228529	0.87[EUR][1000 genomes]
rs36079558	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4253011	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4253028	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4253042	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs4253049	0.90[EUR][1000 genomes]
rs4253055	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs4253101	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[GIH][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs4253106	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[GIH][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs4253121	0.88[EUR][1000 genomes]
rs4253165	0.88[EUR][1000 genomes]
rs4253166	0.88[EUR][1000 genomes]
rs4253193	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs56164647	0.87[EUR][1000 genomes]
rs58002245	0.88[EUR][1000 genomes]
rs58711755	0.90[EUR][1000 genomes]
rs58912975	0.85[EUR][1000 genomes]
rs59898389	0.90[EUR][1000 genomes]
rs61846612	0.90[EUR][1000 genomes]
rs61846615	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61846616	0.90[EUR][1000 genomes]
rs61846617	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61846618	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61846620	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61846637	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61850971	0.85[EUR][1000 genomes]
rs61850976	0.86[EUR][1000 genomes]
rs7067651	0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs7073830	0.88[EUR][1000 genomes]
rs7093098	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7097122	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097866	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7909222	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920256	0.88[EUR][1000 genomes]
rs971667	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50777800-50781200	Enhancers	Placenta Amnion	Placenta Amnion
2	chr10:50778000-50782600	Enhancers	Hela-S3	cervix
3	chr10:50778800-50780600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:50779000-50782000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:50779400-50782200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:50779400-50782400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:50779400-50782400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:50779800-50781400	Weak transcription	Osteobl	bone
9	chr10:50780000-50787400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:50780200-50782200	Enhancers	Placenta	Placenta

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