Variant report

Variant	rs17721089
Chromosome Location	chr8:10705438-10705439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10695954..10697810-chr8:10705274..10708188,2	K562	blood:
2	chr8:10704113..10707157-chr8:10708528..10711302,3	K562	blood:

Variant related genes	Relation type
ENSG00000254093	Chromatin interaction
ENSG00000258724	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10503409	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs10503410	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1106740	0.81[EUR][1000 genomes]
rs11995539	0.81[EUR][1000 genomes]
rs11998382	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs12155811	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs12375394	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12750	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs1549792	0.81[EUR][1000 genomes]
rs1549793	0.81[EUR][1000 genomes]
rs17718772	1.00[CEU][hapmap]
rs17720365	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17774331	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs17774398	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs17774627	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs17776404	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17776427	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs17776497	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17776622	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17776946	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2005310	0.81[EUR][1000 genomes]
rs55637012	0.81[EUR][1000 genomes]
rs55848210	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56023918	0.81[EUR][1000 genomes]
rs56046029	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56109041	0.81[EUR][1000 genomes]
rs56122299	0.81[EUR][1000 genomes]
rs57348261	0.91[EUR][1000 genomes]
rs58193873	0.91[EUR][1000 genomes]
rs7009920	0.85[CEU][hapmap]
rs714370	0.90[EUR][1000 genomes]
rs73200740	0.81[EUR][1000 genomes]
rs73200742	0.81[EUR][1000 genomes]
rs73208756	0.81[EUR][1000 genomes]
rs73208757	0.81[EUR][1000 genomes]
rs73208762	0.81[EUR][1000 genomes]
rs73208766	0.89[EUR][1000 genomes]
rs73208769	0.91[EUR][1000 genomes]
rs73208773	0.90[EUR][1000 genomes]
rs73208775	0.91[EUR][1000 genomes]
rs73208778	0.91[EUR][1000 genomes]
rs73208781	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73208782	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73208785	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73208789	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73208790	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73208791	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73208792	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73208793	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73208794	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73208795	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73209913	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73209918	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73209921	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73209922	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7817252	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7826036	0.81[EUR][1000 genomes]
rs7827063	0.81[EUR][1000 genomes]
rs7838335	0.85[CEU][hapmap]
rs7845731	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs891558	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs891559	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs9650658	0.85[CEU][hapmap]
rs9650659	0.95[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1026802	chr8:10576444-10754489	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv539469	chr8:10576444-10754489	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1031726	chr8:10627742-10749369	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv508497	chr8:10680621-10750255	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10698000-10707800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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