Variant report
| Variant | rs17721739 |
|---|---|
| Chromosome Location | chr11:18056360-18056361 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:18047843..18050267-chr11:18056135..18057672,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs17720513 | 1.00[CEU][hapmap] |
| rs17721184 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes] |
| rs17794213 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes] |
| rs17794760 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs211126 | 0.84[EUR][1000 genomes] |
| rs211127 | 0.84[EUR][1000 genomes] |
| rs211134 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs211138 | 0.81[EUR][1000 genomes] |
| rs2237912 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2237921 | 0.85[JPT][hapmap] |
| rs2283236 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes] |
| rs2283239 | 1.00[CEU][hapmap];0.85[JPT][hapmap] |
| rs34614478 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs394218 | 1.00[CEU][hapmap] |
| rs3993323 | 1.00[CEU][hapmap];0.85[JPT][hapmap] |
| rs3993324 | 1.00[CEU][hapmap];0.85[JPT][hapmap] |
| rs440234 | 1.00[CEU][hapmap] |
| rs4757605 | 1.00[CEU][hapmap];0.85[JPT][hapmap] |
| rs4757615 | 0.90[CEU][hapmap] |
| rs61882461 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs61882465 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs61884492 | 0.84[EUR][1000 genomes] |
| rs61884493 | 0.84[EUR][1000 genomes] |
| rs61884494 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs72874057 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs72874061 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs758437 | 1.00[CEU][hapmap];0.85[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949248 | chr11:17791822-18692687 | Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 156 gene(s) | inside rSNPs | diseases |
| 2 | nsv897026 | chr11:17823296-18084878 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:18042600-18064600 | Weak transcription | Aorta | Aorta |
