Variant report

Variant	rs1772810
Chromosome Location	chr10:119157485-119157486
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11594087	0.90[CEU][hapmap]
rs11599568	0.93[EUR][1000 genomes]
rs1638670	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17095837	1.00[CHB][hapmap]
rs2490632	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs363241	0.95[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1772810	PDZD8	Cis_1M	lymphoblastoid	RTeQTL
rs1772810	SLC18A2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119151600-119158800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:119151800-119164400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:119157200-119159800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:119157200-119160000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr10:119157400-119157800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:119157400-119158000	Active TSS	Primary B cells from cord blood	blood
7	chr10:119157400-119159000	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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