Variant report

Variant	rs17733673
Chromosome Location	chr12:63095381-63095382
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63094962..63097559-chr12:63102121..63103978,2	MCF-7	breast:
2	chr12:62996063..62998994-chr12:63094952..63099906,5	MCF-7	breast:
3	chr12:62996695..62998472-chr12:63095072..63097500,2	K562	blood:
4	chr12:62995577..62998816-chr12:63091138..63096453,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257354	Chromatin interaction
ENSG00000199179	Chromatin interaction
ENSG00000221949	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13313182	0.82[EUR][1000 genomes]
rs17733713	0.82[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17733777	0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17734018	1.00[CHB][hapmap]
rs57163227	0.88[EUR][1000 genomes]
rs57941935	0.82[EUR][1000 genomes]
rs61919551	0.84[EUR][1000 genomes]
rs61919555	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7135080	0.85[CEU][hapmap];0.90[EUR][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63067400-63116800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:63068800-63102800	Weak transcription	Right Ventricle	heart
3	chr12:63069400-63096600	Weak transcription	Fetal Kidney	kidney
4	chr12:63071600-63096400	Weak transcription	Left Ventricle	heart
5	chr12:63074600-63096400	Weak transcription	Pancreas	Pancrea
6	chr12:63077800-63095400	Weak transcription	Placenta	Placenta
7	chr12:63078000-63118600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr12:63079000-63096400	Weak transcription	Ovary	ovary
9	chr12:63080000-63096400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr12:63080000-63096400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr12:63083800-63103000	Weak transcription	Gastric	stomach
12	chr12:63087000-63095400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr12:63087200-63095600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr12:63087200-63113600	Weak transcription	Liver	Liver
15	chr12:63087400-63095400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr12:63087400-63097200	Weak transcription	Fetal Intestine Large	intestine
17	chr12:63087600-63096400	Weak transcription	Aorta	Aorta
18	chr12:63087600-63096800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr12:63087800-63096400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr12:63087800-63096600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr12:63087800-63096800	Weak transcription	Fetal Intestine Small	intestine
22	chr12:63088200-63096400	Weak transcription	Fetal Stomach	stomach
23	chr12:63088600-63095600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr12:63089800-63095400	Weak transcription	Fetal Muscle Leg	muscle
25	chr12:63089800-63096800	Weak transcription	Primary T cells from cord blood	blood
26	chr12:63090800-63099000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr12:63091000-63099400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr12:63091200-63096600	Enhancers	NHDF-Ad	bronchial
29	chr12:63092000-63096800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr12:63092200-63095400	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr12:63092200-63095600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr12:63092200-63096000	Weak transcription	Adipose Nuclei	Adipose
33	chr12:63092200-63096200	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr12:63092200-63096400	Weak transcription	Right Atrium	heart
35	chr12:63092400-63096200	Weak transcription	HSMMtube	muscle
36	chr12:63092400-63096400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr12:63092400-63096400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr12:63092400-63096400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr12:63092400-63096400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr12:63093000-63095400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr12:63093000-63095400	Weak transcription	Hela-S3	cervix
42	chr12:63093000-63096200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr12:63093200-63095400	Strong transcription	HepG2	liver
44	chr12:63093600-63098600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr12:63094000-63095400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr12:63094200-63095400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr12:63094200-63096000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr12:63094200-63096000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr12:63094200-63096200	Weak transcription	HSMM	muscle
50	chr12:63094200-63096200	Weak transcription	NHEK	skin

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