Variant report

Variant	rs17733713
Chromosome Location	chr12:63096946-63096947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63094962..63097559-chr12:63102121..63103978,2	MCF-7	breast:
2	chr12:63092260..63094911-chr12:63095834..63100024,3	MCF-7	breast:
3	chr12:62996063..62998994-chr12:63094952..63099906,5	MCF-7	breast:
4	chr12:62996695..62998472-chr12:63095072..63097500,2	K562	blood:
5	chr12:63039398..63042181-chr12:63096184..63099134,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000199179	Chromatin interaction
ENSG00000257354	Chromatin interaction
ENSG00000221949	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11174620	0.81[EUR][1000 genomes]
rs13313182	0.83[EUR][1000 genomes]
rs17733673	0.82[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17733777	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17734018	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs57163227	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57941935	0.83[EUR][1000 genomes]
rs61919551	0.85[EUR][1000 genomes]
rs61919555	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7135080	0.92[EUR][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63067400-63116800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:63068800-63102800	Weak transcription	Right Ventricle	heart
3	chr12:63078000-63118600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr12:63083800-63103000	Weak transcription	Gastric	stomach
5	chr12:63087200-63113600	Weak transcription	Liver	Liver
6	chr12:63087400-63097200	Weak transcription	Fetal Intestine Large	intestine
7	chr12:63090800-63099000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr12:63091000-63099400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr12:63093600-63098600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr12:63094200-63098600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr12:63094800-63097600	Enhancers	Brain Cingulate Gyrus	brain
12	chr12:63094800-63098400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr12:63095000-63098000	Enhancers	Brain Anterior Caudate	brain
14	chr12:63095000-63098200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:63095000-63098200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr12:63095000-63098200	Enhancers	Brain Hippocampus Middle	brain
17	chr12:63095000-63098200	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr12:63095000-63098200	Enhancers	Brain Substantia Nigra	brain
19	chr12:63095000-63098800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr12:63095000-63100200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr12:63095200-63097800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr12:63095200-63098200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr12:63095200-63098200	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr12:63095200-63098400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr12:63095400-63097600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr12:63095400-63097600	Enhancers	Hela-S3	cervix
27	chr12:63095400-63097600	Enhancers	HUVEC	blood vessel
28	chr12:63095400-63098000	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr12:63095400-63098000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr12:63095400-63098800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr12:63095400-63098800	Enhancers	NHLF	lung
32	chr12:63095400-63099200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr12:63095600-63097800	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr12:63095600-63097800	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr12:63095600-63098200	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr12:63095600-63098600	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr12:63095600-63098800	Enhancers	HMEC	breast
38	chr12:63095600-63099200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr12:63096000-63098200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr12:63096000-63098200	Enhancers	Adipose Nuclei	Adipose
41	chr12:63096000-63098600	Enhancers	Fetal Muscle Leg	muscle
42	chr12:63096000-63098600	Enhancers	Placenta	Placenta
43	chr12:63096000-63098600	Enhancers	Stomach Smooth Muscle	stomach
44	chr12:63096200-63097000	Flanking Active TSS	A549	lung
45	chr12:63096200-63097600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
46	chr12:63096200-63097600	Enhancers	Colon Smooth Muscle	Colon
47	chr12:63096200-63097800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr12:63096200-63097800	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr12:63096200-63098200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr12:63096200-63098400	Enhancers	HSMM	muscle

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