Variant report

Variant	rs17733777
Chromosome Location	chr12:63098281-63098282
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63032737..63035703-chr12:63097424..63099725,2	MCF-7	breast:
2	chr12:63097942..63100132-chr12:63116970..63118989,2	MCF-7	breast:
3	chr12:63092260..63094911-chr12:63095834..63100024,3	MCF-7	breast:
4	chr12:62996063..62998994-chr12:63094952..63099906,5	MCF-7	breast:
5	chr12:63097572..63099203-chr12:63101470..63104150,2	MCF-7	breast:
6	chr12:63097728..63100146-chr12:63104494..63106839,2	MCF-7	breast:
7	chr12:63039398..63042181-chr12:63096184..63099134,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257354	Chromatin interaction
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13313182	0.85[EUR][1000 genomes]
rs17733673	0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17733713	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17734018	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs57163227	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57941935	0.82[EUR][1000 genomes]
rs61919551	0.87[EUR][1000 genomes]
rs61919555	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7135080	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63067400-63116800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:63068800-63102800	Weak transcription	Right Ventricle	heart
3	chr12:63078000-63118600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr12:63083800-63103000	Weak transcription	Gastric	stomach
5	chr12:63087200-63113600	Weak transcription	Liver	Liver
6	chr12:63090800-63099000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr12:63091000-63099400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr12:63093600-63098600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:63094200-63098600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:63094800-63098400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr12:63095000-63098800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr12:63095000-63100200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr12:63095200-63098400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr12:63095400-63098800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr12:63095400-63098800	Enhancers	NHLF	lung
16	chr12:63095400-63099200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr12:63095600-63098600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr12:63095600-63098800	Enhancers	HMEC	breast
19	chr12:63095600-63099200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr12:63096000-63098600	Enhancers	Fetal Muscle Leg	muscle
21	chr12:63096000-63098600	Enhancers	Placenta	Placenta
22	chr12:63096000-63098600	Enhancers	Stomach Smooth Muscle	stomach
23	chr12:63096200-63098400	Enhancers	HSMM	muscle
24	chr12:63096200-63098600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr12:63096200-63099000	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr12:63096200-63099000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr12:63096400-63098400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr12:63096400-63098600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr12:63096400-63098600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr12:63096400-63098600	Enhancers	Fetal Stomach	stomach
31	chr12:63096400-63098800	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr12:63096400-63101800	Enhancers	Fetal Thymus	thymus
33	chr12:63096600-63098600	Enhancers	Lung	lung
34	chr12:63096600-63098800	Enhancers	Thymus	Thymus
35	chr12:63096600-63157000	Weak transcription	Pancreas	Pancrea
36	chr12:63096800-63098600	Weak transcription	HepG2	liver
37	chr12:63097000-63098600	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr12:63097000-63099000	Enhancers	A549	lung
39	chr12:63097000-63099000	Enhancers	Osteobl	bone
40	chr12:63097000-63099200	Enhancers	NHDF-Ad	bronchial
41	chr12:63097000-63105600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr12:63097000-63118800	Weak transcription	Stomach Mucosa	stomach
43	chr12:63097400-63105200	Weak transcription	Fetal Kidney	kidney
44	chr12:63097600-63098400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr12:63097600-63099000	Enhancers	NHEK	skin
46	chr12:63097600-63099600	Strong transcription	Fetal Intestine Small	intestine
47	chr12:63097600-63102600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr12:63097600-63102600	Weak transcription	Ovary	ovary
49	chr12:63097600-63104400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr12:63097600-63105000	Weak transcription	Colon Smooth Muscle	Colon

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