Variant report

Variant	rs1773604
Chromosome Location	chr10:25683931-25683932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1334057	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1341964	0.87[AFR][1000 genomes]
rs1341967	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1361633	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1410928	0.87[ASN][1000 genomes]
rs1410935	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1413395	0.82[ASN][1000 genomes]
rs1413398	0.85[ASN][1000 genomes]
rs1418126	0.87[ASN][1000 genomes]
rs1576319	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1590836	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1591250	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1612726	0.87[ASN][1000 genomes]
rs1754248	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1754252	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1754257	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1754259	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1754263	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1754266	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1754270	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1754276	0.84[ASN][1000 genomes]
rs1754277	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1760726	0.87[AFR][1000 genomes]
rs1773611	0.88[ASN][1000 genomes]
rs1773615	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1773655	0.85[ASN][1000 genomes]
rs1773656	0.87[ASN][1000 genomes]
rs1773657	0.87[ASN][1000 genomes]
rs1773658	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1773659	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1773688	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7072189	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7081326	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7097708	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7924230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824591	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824594	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs824596	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs824601	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs824602	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs824604	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs844042	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv550226	chr10:25653017-25693426	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25680600-25686000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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