Variant report

Variant	rs1773654
Chromosome Location	chr10:25729604-25729605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25725645..25727300-chr10:25728753..25731180,2	K562	blood:
2	chr10:25726717..25730282-chr10:25730723..25733512,4	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10741085	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10764548	0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs10828776	1.00[JPT][hapmap]
rs10828800	0.81[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs11014552	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1329258	1.00[JPT][hapmap]
rs1329267	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1329268	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs1334057	0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.86[AMR][1000 genomes]
rs1341961	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1341962	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1341967	0.85[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs1361633	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1410928	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1410935	1.00[JPT][hapmap]
rs1413396	0.87[CHD][hapmap];0.92[GIH][hapmap]
rs1413398	0.95[JPT][hapmap]
rs1418126	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1418129	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1576319	1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs1612726	0.81[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[ASN][1000 genomes]
rs1754246	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1754248	0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[ASN][1000 genomes]
rs1754252	0.85[AMR][1000 genomes]
rs1754259	0.86[AMR][1000 genomes]
rs1754263	0.81[AMR][1000 genomes]
rs1754266	0.83[AMR][1000 genomes]
rs1754270	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1754277	0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1754281	0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs1760750	0.95[JPT][hapmap]
rs1760757	0.94[JPT][hapmap]
rs1773615	0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes]
rs1773624	1.00[JPT][hapmap]
rs1773631	1.00[JPT][hapmap]
rs1773655	0.85[ASN][1000 genomes]
rs1773656	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1773657	0.83[ASN][1000 genomes]
rs1773658	0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[ASN][1000 genomes]
rs1773659	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1773663	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1773678	0.87[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs1773681	0.85[CEU][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap]
rs1773682	0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs1773688	0.82[ASN][1000 genomes]
rs1854471	1.00[JPT][hapmap]
rs1855462	0.90[JPT][hapmap]
rs2480351	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs3949311	0.87[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs4271295	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs4405201	1.00[JPT][hapmap]
rs4749022	0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs539357	0.95[JPT][hapmap]
rs545905	0.95[JPT][hapmap];0.87[MEX][hapmap]
rs564371	0.95[JPT][hapmap];0.87[MEX][hapmap]
rs577382	0.95[JPT][hapmap]
rs7072189	0.87[AMR][1000 genomes]
rs7081326	0.83[ASN][1000 genomes]
rs7097708	0.83[ASN][1000 genomes]
rs7392687	0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs768540	1.00[JPT][hapmap]
rs7924230	1.00[JPT][hapmap]
rs824591	0.92[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap]
rs824594	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs824596	0.85[AMR][1000 genomes]
rs824601	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs824602	0.85[CEU][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs824604	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs844042	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs956085	0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs956086	0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs956088	0.85[CEU][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap]
rs961027	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2761584	chr10:25727933-25732659	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25725800-25730200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:25726000-25730000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:25728400-25731200	Active TSS	Skeletal Muscle Female	skeletal muscle
4	chr10:25729000-25730800	Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr10:25729400-25730600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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