Variant report

Variant	rs17741681
Chromosome Location	chr14:55810715-55810716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55806216..55808793-chr14:55809475..55811902,3	MCF-7	breast:
2	chr14:55809381..55811401-chr14:55819564..55823074,3	MCF-7	breast:
3	chr14:55737988..55740346-chr14:55809707..55813247,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258455	Chromatin interaction
ENSG00000258413	Chromatin interaction
ENSG00000178974	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10483641	0.88[CEU][hapmap]
rs10498475	1.00[CEU][hapmap]
rs17128484	0.82[CEU][hapmap]
rs17671923	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17672376	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17672950	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17673930	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17675052	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17740413	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17741825	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17742621	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17743484	0.88[CEU][hapmap]
rs1959443	0.88[CEU][hapmap]
rs2274271	0.88[CEU][hapmap]
rs35070799	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41299199	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41437744	0.88[CEU][hapmap]
rs60505634	1.00[ASN][1000 genomes]
rs713473	0.88[CEU][hapmap]
rs713475	0.88[CEU][hapmap]
rs7141706	1.00[CEU][hapmap]
rs7159490	0.88[CEU][hapmap]
rs7160411	1.00[CEU][hapmap]
rs72717745	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72717751	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72717752	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72717759	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323280	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55779200-55817600	Weak transcription	Hela-S3	cervix
2	chr14:55780800-55817200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr14:55782000-55817200	Weak transcription	HSMM	muscle
4	chr14:55791800-55817200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:55794000-55811800	Weak transcription	Brain Anterior Caudate	brain
6	chr14:55798200-55817200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:55800000-55817200	Weak transcription	Dnd41	blood
8	chr14:55800600-55816200	Weak transcription	Primary B cells from cord blood	blood
9	chr14:55800600-55823600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr14:55801000-55817200	Weak transcription	HepG2	liver
11	chr14:55801200-55817200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:55801200-55817200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:55801200-55817200	Weak transcription	Liver	Liver
14	chr14:55801200-55817200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr14:55801200-55842800	Weak transcription	Fetal Brain Male	brain
16	chr14:55801400-55817400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr14:55801400-55817400	Weak transcription	Brain Hippocampus Middle	brain
18	chr14:55801600-55817200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr14:55802200-55817000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr14:55802200-55817400	Weak transcription	Fetal Intestine Small	intestine
21	chr14:55803400-55817200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:55803400-55817200	Weak transcription	Placenta	Placenta
23	chr14:55803600-55817200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:55804400-55811000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr14:55804800-55811400	Weak transcription	Gastric	stomach
26	chr14:55805200-55811800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr14:55805200-55813600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr14:55805200-55817200	Weak transcription	Fetal Intestine Large	intestine
29	chr14:55805400-55812200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr14:55805800-55817600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr14:55806600-55811000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr14:55806600-55817000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr14:55806800-55815600	Weak transcription	Fetal Kidney	kidney
34	chr14:55806800-55820800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr14:55807000-55813600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr14:55807000-55813800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr14:55807000-55816600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr14:55807000-55817000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr14:55807000-55817200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr14:55807000-55817600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr14:55807200-55811800	Weak transcription	Spleen	Spleen
42	chr14:55807200-55812200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr14:55807200-55813000	Weak transcription	Colon Smooth Muscle	Colon
44	chr14:55807200-55813600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr14:55807200-55815600	Weak transcription	HMEC	breast
46	chr14:55807200-55817200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr14:55807200-55817200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr14:55807200-55817600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr14:55807200-55817600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr14:55807200-55817800	Weak transcription	HSMMtube	muscle

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