Variant report

Variant	rs17742422
Chromosome Location	chr5:151451852-151451853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151443903..151445789-chr5:151450245..151452999,2	K562	blood:
2	chr5:151448044..151450792-chr5:151450881..151452825,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10515655	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs149093	0.82[ASN][1000 genomes]
rs154096	0.80[ASN][1000 genomes]
rs154102	0.81[ASN][1000 genomes]
rs154108	0.83[ASN][1000 genomes]
rs154109	0.81[ASN][1000 genomes]
rs154112	0.82[ASN][1000 genomes]
rs154701	0.80[ASN][1000 genomes]
rs17112702	0.83[ASN][1000 genomes]
rs17662569	0.82[ASN][1000 genomes]
rs17742249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17742283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17742331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17742343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17742440	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17804556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs253723	0.83[ASN][1000 genomes]
rs29848	0.86[ASN][1000 genomes]
rs29851	0.84[ASN][1000 genomes]
rs29856	0.83[ASN][1000 genomes]
rs3852201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3909851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3909854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3909856	0.84[ASN][1000 genomes]
rs440768	0.83[ASN][1000 genomes]
rs58240603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72802282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72802285	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72802288	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv5071	chr5:151438330-151472013	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv508384	chr5:151438582-151487326	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151446800-151452000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr5:151447000-151452000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:151447000-151452000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:151450200-151452000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:151450400-151452800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:151451000-151453400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:151451200-151452000	Weak transcription	Brain Germinal Matrix	brain
8	chr5:151451400-151453600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:151451600-151452400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:151451600-151452400	Enhancers	Fetal Muscle Leg	muscle
11	chr5:151451600-151453000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:151451600-151453400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:151451800-151452200	Enhancers	NH-A	brain
14	chr5:151451800-151452600	Enhancers	Fetal Brain Female	brain

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