Variant report

Variant	rs17745379
Chromosome Location	chr12:11731103-11731104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:11730343..11732400-chr12:12028569..12030434,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10491979	0.93[EUR][1000 genomes]
rs10491981	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12304175	0.96[EUR][1000 genomes]
rs12307843	0.93[EUR][1000 genomes]
rs16935010	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16935013	1.00[EUR][1000 genomes]
rs16935135	0.96[EUR][1000 genomes]
rs17745415	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17818016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17818022	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1795551	0.97[EUR][1000 genomes]
rs57529731	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61472986	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7302311	0.93[EUR][1000 genomes]
rs73286605	0.93[EUR][1000 genomes]
rs73286618	0.96[EUR][1000 genomes]
rs7954816	0.93[EUR][1000 genomes]
rs7972594	0.93[EUR][1000 genomes]
rs7975032	0.90[EUR][1000 genomes]
rs969769	0.93[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11728800-11731200	Enhancers	NHEK	skin
2	chr12:11728800-11731600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:11728800-11734000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr12:11729000-11731800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:11729000-11732000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:11729200-11732600	Weak transcription	NH-A	brain
7	chr12:11729200-11733200	Weak transcription	Thymus	Thymus
8	chr12:11729400-11732400	Weak transcription	Aorta	Aorta
9	chr12:11729600-11733000	Weak transcription	Colon Smooth Muscle	Colon
10	chr12:11729600-11733200	Weak transcription	HUVEC	blood vessel
11	chr12:11729800-11733400	Weak transcription	Esophagus	oesophagus
12	chr12:11730000-11731200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr12:11730400-11731200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr12:11730400-11732000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr12:11730400-11733200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr12:11730800-11732600	Enhancers	Primary B cells from peripheral blood	blood
17	chr12:11730800-11762200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr12:11731000-11731600	Enhancers	GM12878-XiMat	blood
19	chr12:11731000-11732200	Weak transcription	HMEC	breast
20	chr12:11731000-11732400	Weak transcription	Osteobl	bone
21	chr12:11731000-11733000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr12:11731000-11733000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr12:11731000-11733200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr12:11731000-11733200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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