Variant report

Variant	rs177551
Chromosome Location	chr11:16930289-16930290
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16924323..16927213-chr11:16930206..16932852,3	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10741713	0.83[ASN][1000 genomes]
rs10766360	0.81[ASN][1000 genomes]
rs11024087	0.81[ASN][1000 genomes]
rs11024090	0.81[ASN][1000 genomes]
rs12418111	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1638457	0.81[ASN][1000 genomes]
rs16933675	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16933680	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16933682	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16933683	0.83[ASN][1000 genomes]
rs16933684	0.81[ASN][1000 genomes]
rs177544	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs177546	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs177554	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs177559	0.83[ASN][1000 genomes]
rs177560	0.83[ASN][1000 genomes]
rs177561	0.83[ASN][1000 genomes]
rs177562	0.83[ASN][1000 genomes]
rs177563	0.83[ASN][1000 genomes]
rs1860024	0.81[ASN][1000 genomes]
rs1860025	0.81[ASN][1000 genomes]
rs2108603	0.81[ASN][1000 genomes]
rs2190752	0.81[ASN][1000 genomes]
rs2215086	0.83[ASN][1000 genomes]
rs2353367	0.83[ASN][1000 genomes]
rs2883150	0.81[ASN][1000 genomes]
rs35005405	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35109048	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs378863	0.81[ASN][1000 genomes]
rs381815	0.81[ASN][1000 genomes]
rs388968	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs393633	0.81[ASN][1000 genomes]
rs407354	0.81[ASN][1000 genomes]
rs413858	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs414219	0.83[ASN][1000 genomes]
rs414992	0.82[ASN][1000 genomes]
rs422272	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs425325	0.81[ASN][1000 genomes]
rs427429	0.81[ASN][1000 genomes]
rs428840	0.82[ASN][1000 genomes]
rs432046	0.81[ASN][1000 genomes]
rs434899	0.81[ASN][1000 genomes]
rs435206	0.83[ASN][1000 genomes]
rs445205	0.81[ASN][1000 genomes]
rs445431	0.83[ASN][1000 genomes]
rs446518	0.81[ASN][1000 genomes]
rs448671	0.81[ASN][1000 genomes]
rs4756875	0.83[ASN][1000 genomes]
rs4756876	0.83[ASN][1000 genomes]
rs4757445	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4757449	0.83[ASN][1000 genomes]
rs4757452	0.82[ASN][1000 genomes]
rs58542530	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59828007	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61882035	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61882036	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61882037	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61882038	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6486326	0.81[ASN][1000 genomes]
rs6486329	0.81[ASN][1000 genomes]
rs7111470	0.81[ASN][1000 genomes]
rs7396552	0.81[ASN][1000 genomes]
rs758402	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7924696	0.81[ASN][1000 genomes]
rs7926335	0.86[ASN][1000 genomes]
rs982811	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2757425	chr11:16915291-16934130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759805	chr11:16915291-16934130	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16916000-16931000	Weak transcription	Spleen	Spleen
2	chr11:16919800-16933600	Weak transcription	Fetal Kidney	kidney
3	chr11:16922000-16934000	Weak transcription	HepG2	liver
4	chr11:16925200-16939800	Weak transcription	Colonic Mucosa	Colon
5	chr11:16925600-16939800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:16927200-16932600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:16927400-16930600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:16927400-16931200	Weak transcription	Fetal Intestine Large	intestine
9	chr11:16927400-16932400	Weak transcription	HMEC	breast
10	chr11:16927400-16932600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:16927400-16932800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:16927400-16934800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:16927600-16930400	Weak transcription	Left Ventricle	heart
14	chr11:16927600-16931000	Weak transcription	Esophagus	oesophagus
15	chr11:16927600-16931000	Weak transcription	Gastric	stomach
16	chr11:16927600-16931000	Weak transcription	Right Atrium	heart
17	chr11:16927600-16931000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:16927600-16932000	Weak transcription	Right Ventricle	heart
19	chr11:16927600-16932800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:16927600-16933600	Weak transcription	Brain Anterior Caudate	brain
21	chr11:16927600-16934200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:16927600-16939200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:16927800-16930800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr11:16927800-16930800	Weak transcription	Small Intestine	intestine
25	chr11:16927800-16931000	Weak transcription	Fetal Intestine Small	intestine
26	chr11:16927800-16931000	Weak transcription	Pancreas	Pancrea
27	chr11:16927800-16931800	Weak transcription	Fetal Lung	lung
28	chr11:16927800-16939400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr11:16927800-16944400	Weak transcription	A549	lung
30	chr11:16929800-16930800	Enhancers	GM12878-XiMat	blood
31	chr11:16929800-16933200	Enhancers	Fetal Heart	heart
32	chr11:16929800-16935200	Enhancers	Stomach Mucosa	stomach

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