Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97397690..97400438-chr14:97408446..97410821,2	K562	blood:

Variant related genes	Relation type
ENSG00000258825	Chromatin interaction

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11622737	0.91[EUR][1000 genomes]
rs11851985	0.92[EUR][1000 genomes]
rs1280081	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1683107	0.97[EUR][1000 genomes]
rs17094694	0.97[EUR][1000 genomes]
rs17094783	0.89[EUR][1000 genomes]
rs1738908	0.97[EUR][1000 genomes]
rs17759833	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17760210	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2179940	0.88[EUR][1000 genomes]
rs60617803	0.89[EUR][1000 genomes]
rs60900692	0.89[EUR][1000 genomes]
rs6575605	0.92[EUR][1000 genomes]
rs710266	0.97[EUR][1000 genomes]
rs710267	0.97[EUR][1000 genomes]
rs7149912	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs74076200	0.82[EUR][1000 genomes]
rs74076840	0.89[EUR][1000 genomes]
rs74076841	0.89[EUR][1000 genomes]
rs74076845	0.89[EUR][1000 genomes]
rs74076846	0.89[EUR][1000 genomes]
rs74076847	0.89[EUR][1000 genomes]
rs74076849	0.89[EUR][1000 genomes]
rs74076850	0.89[EUR][1000 genomes]
rs74076851	0.89[EUR][1000 genomes]
rs74076853	0.89[EUR][1000 genomes]
rs74076856	0.89[EUR][1000 genomes]
rs74076857	0.89[EUR][1000 genomes]
rs74078739	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74078741	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs856225	0.80[CEU][hapmap];0.91[EUR][1000 genomes]
rs856266	0.97[EUR][1000 genomes]
rs856271	0.99[EUR][1000 genomes]
rs856274	0.92[EUR][1000 genomes]
rs856279	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97379400-97411800	Weak transcription	Primary T cells from cord blood	blood
2	chr14:97398000-97412800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:97404600-97410400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:97408600-97428600	Weak transcription	Thymus	Thymus
5	chr14:97409600-97419000	Strong transcription	Dnd41	blood

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