Variant report

Variant	rs17760210
Chromosome Location	chr14:97418223-97418224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11622737	0.88[EUR][1000 genomes]
rs11851985	0.95[EUR][1000 genomes]
rs1280081	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1683107	1.00[EUR][1000 genomes]
rs17094694	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17094783	0.92[EUR][1000 genomes]
rs1738908	1.00[EUR][1000 genomes]
rs17759833	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17759977	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2179940	0.91[EUR][1000 genomes]
rs60617803	0.92[EUR][1000 genomes]
rs60900692	0.92[EUR][1000 genomes]
rs6575605	0.95[EUR][1000 genomes]
rs710266	1.00[EUR][1000 genomes]
rs710267	1.00[EUR][1000 genomes]
rs7149912	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs74076840	0.92[EUR][1000 genomes]
rs74076841	0.92[EUR][1000 genomes]
rs74076845	0.92[EUR][1000 genomes]
rs74076846	0.92[EUR][1000 genomes]
rs74076847	0.92[EUR][1000 genomes]
rs74076849	0.92[EUR][1000 genomes]
rs74076850	0.92[EUR][1000 genomes]
rs74076851	0.92[EUR][1000 genomes]
rs74076853	0.92[EUR][1000 genomes]
rs74076856	0.92[EUR][1000 genomes]
rs74076857	0.92[EUR][1000 genomes]
rs74078739	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74078741	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs856225	0.80[CEU][hapmap];0.88[EUR][1000 genomes]
rs856266	1.00[EUR][1000 genomes]
rs856271	0.99[EUR][1000 genomes]
rs856274	0.95[EUR][1000 genomes]
rs856279	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv902212	chr14:97413032-97474908	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs17760210	VRK1	cis	cerebellum	SCAN
rs17760210	PAPOLA	cis	parietal	SCAN
rs17760210	SERPINA13	cis	parietal	SCAN
rs17760210	VRK1	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97408600-97428600	Weak transcription	Thymus	Thymus
2	chr14:97409600-97419000	Strong transcription	Dnd41	blood
3	chr14:97416000-97420400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr14:97416400-97425600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr14:97416600-97425000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr14:97417600-97418800	Enhancers	Fetal Brain Female	brain
7	chr14:97417600-97419000	Enhancers	Brain Germinal Matrix	brain
8	chr14:97417800-97426400	Weak transcription	Primary B cells from peripheral blood	blood

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