Variant report

Variant	rs17768711
Chromosome Location	chr7:38902681-38902682
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:38902352..38905123-chr7:38929723..38931780,2	MCF-7	breast:
2	chr7:38900320..38904154-chr7:38910727..38914259,3	K562	blood:
3	chr7:38900726..38902861-chr7:38904557..38906481,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10247503	0.89[CHB][hapmap]
rs10486677	0.94[CHB][hapmap]
rs10486678	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs11980882	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12670221	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12672793	0.83[CHB][hapmap]
rs12672885	0.94[CHB][hapmap]
rs12674115	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17700142	0.82[CHB][hapmap]
rs17700262	0.94[CHB][hapmap]
rs17700752	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs17767818	0.82[CHB][hapmap]
rs17768153	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs17768753	0.83[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1859937	0.84[CHB][hapmap]
rs2074655	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs2074657	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs2108507	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes]
rs2189855	0.93[CHB][hapmap]
rs2240351	0.89[CHB][hapmap]
rs2240352	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs2240353	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs2286086	0.88[CHB][hapmap]
rs2286088	0.94[CHB][hapmap]
rs2286098	0.94[CHB][hapmap]
rs2286105	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs2286106	0.89[CHB][hapmap]
rs2286109	0.82[CHB][hapmap]
rs2392598	0.87[CHB][hapmap]
rs2893567	0.85[JPT][hapmap]
rs34724372	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3801129	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3801139	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs3801140	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs3801143	0.89[CHB][hapmap]
rs3801145	0.89[CHB][hapmap]
rs4723785	0.89[CHB][hapmap]
rs61363591	0.99[ASN][1000 genomes]
rs6462872	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6956146	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6975048	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs733150	0.89[CHB][hapmap]
rs73357792	0.90[EUR][1000 genomes]
rs7780490	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7780625	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes]
rs7785911	0.89[CHB][hapmap]
rs7795874	0.89[CHB][hapmap]
rs7800167	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs886646	0.87[CHB][hapmap]
rs9638944	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032637	chr7:38832627-38902723	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv887966	chr7:38835035-38933942	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38858800-38907600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:38867400-38905200	Weak transcription	Left Ventricle	heart
3	chr7:38871400-38905800	Weak transcription	Aorta	Aorta
4	chr7:38871400-38920000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:38871600-38906000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr7:38873000-38907600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr7:38873200-38919200	Weak transcription	Pancreas	Pancrea
8	chr7:38876400-38906200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr7:38879800-38938000	Weak transcription	Right Ventricle	heart
10	chr7:38880800-38905600	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:38881200-38907600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:38881200-38919200	Weak transcription	Psoas Muscle	Psoas
13	chr7:38883400-38907600	Weak transcription	Esophagus	oesophagus
14	chr7:38884600-38905600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr7:38886200-38947800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr7:38886400-38907400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:38886400-38907400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr7:38886400-38907600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr7:38886600-38907200	Weak transcription	Colon Smooth Muscle	Colon
20	chr7:38887200-38906600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr7:38887200-38907400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:38887600-38902800	Weak transcription	Liver	Liver
23	chr7:38889200-38903000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:38889200-38907200	Weak transcription	Ovary	ovary
25	chr7:38889400-38906800	Weak transcription	Fetal Stomach	stomach
26	chr7:38889400-38907200	Weak transcription	Lung	lung
27	chr7:38889400-38907400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr7:38889400-38909600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr7:38889400-38948200	Weak transcription	Gastric	stomach
30	chr7:38889600-38932600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:38891200-38903200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr7:38893800-38925600	Weak transcription	Thymus	Thymus
33	chr7:38894000-38903600	Weak transcription	Small Intestine	intestine
34	chr7:38895200-38907200	Weak transcription	Brain Anterior Caudate	brain
35	chr7:38896000-38907600	Weak transcription	Spleen	Spleen
36	chr7:38896600-38906200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr7:38897000-38903400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr7:38897400-38902800	Weak transcription	HepG2	liver
39	chr7:38897600-38907400	Weak transcription	Brain Angular Gyrus	brain
40	chr7:38897600-38909000	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr7:38898000-38902800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr7:38898000-38907600	Weak transcription	HSMM	muscle
43	chr7:38898200-38905200	Weak transcription	Brain Hippocampus Middle	brain
44	chr7:38898200-38907200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr7:38898200-38909200	Weak transcription	NH-A	brain
46	chr7:38898400-38920000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr7:38898600-38906800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr7:38898600-38907200	Weak transcription	Fetal Brain Female	brain
49	chr7:38898600-38907400	Weak transcription	HSMMtube	muscle
50	chr7:38898600-38907400	Weak transcription	Osteobl	bone

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