Variant report

Variant	rs17769788
Chromosome Location	chr14:56784830-56784831
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10144612	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10483656	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12147737	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1427556	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17688725	1.00[CEU][hapmap]
rs17688801	1.00[CEU][hapmap]
rs17689278	1.00[CEU][hapmap]
rs17762499	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17762733	1.00[CEU][hapmap]
rs17832675	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1951955	1.00[CEU][hapmap]
rs2035283	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2343376	1.00[CEU][hapmap]
rs2343604	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28712711	0.95[EUR][1000 genomes]
rs2880615	1.00[CEU][hapmap]
rs3850298	1.00[CEU][hapmap]
rs3912203	1.00[CEU][hapmap]
rs4127813	1.00[CEU][hapmap]
rs58502917	1.00[EUR][1000 genomes]
rs8020301	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs959459	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1044886	chr14:56689682-56834648	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv542104	chr14:56689682-56834648	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv901978	chr14:56740554-56799997	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv901979	chr14:56740554-56802610	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56764400-56785600	Weak transcription	Lung	lung
2	chr14:56764400-56798200	Weak transcription	Pancreas	Pancrea
3	chr14:56764400-56808800	Weak transcription	Thymus	Thymus
4	chr14:56774400-56806400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:56778400-56797200	Weak transcription	Ovary	ovary
6	chr14:56780800-56791400	Weak transcription	Fetal Brain Female	brain
7	chr14:56781000-56785200	Weak transcription	Fetal Intestine Small	intestine
8	chr14:56783200-56797200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr14:56783600-56786800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr14:56783800-56793400	Weak transcription	Aorta	Aorta
11	chr14:56784400-56785200	Strong transcription	Primary T cells from cord blood	blood
12	chr14:56784400-56785200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:56784600-56786800	Enhancers	Dnd41	blood

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