Variant report

Variant	rs17773826
Chromosome Location	chr8:10623510-10623511
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10622933..10625831-chr8:10627358..10629898,3	K562	blood:
2	chr8:10621941..10624619-chr8:10627842..10631333,3	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13256603	0.88[EUR][1000 genomes]
rs13256636	0.88[EUR][1000 genomes]
rs13258593	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13259278	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13262374	0.90[EUR][1000 genomes]
rs13262726	0.87[EUR][1000 genomes]
rs13269896	0.90[EUR][1000 genomes]
rs13270447	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13270498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13271456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13273767	0.95[EUR][1000 genomes]
rs13279753	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13281048	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17152289	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17152398	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17152442	0.80[EUR][1000 genomes]
rs17721019	0.81[AMR][1000 genomes]
rs17773567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2409673	0.87[EUR][1000 genomes]
rs2898246	0.80[EUR][1000 genomes]
rs34380949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35414136	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35633274	0.87[EUR][1000 genomes]
rs35745110	0.87[EUR][1000 genomes]
rs6983180	0.80[EUR][1000 genomes]
rs7006707	0.80[EUR][1000 genomes]
rs71516592	0.87[EUR][1000 genomes]
rs71516594	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71516595	0.95[EUR][1000 genomes]
rs73529608	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1022582	chr8:10571218-10636162	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv539468	chr8:10571218-10636162	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1026802	chr8:10576444-10754489	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
7	nsv539469	chr8:10576444-10754489	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
8	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
10	nsv519768	chr8:10600254-10691993	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1024806	chr8:10605438-10662555	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
13	nsv1031709	chr8:10610545-10657726	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	esv2764105	chr8:10610557-10657726	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv519376	chr8:10611708-10691993	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
16	nsv429860	chr8:10615990-10685890	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
17	nsv1023085	chr8:10617908-10657584	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv539470	chr8:10617908-10657584	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv1019754	chr8:10617908-10700140	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
20	nsv539471	chr8:10617908-10700140	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
21	nsv1026230	chr8:10618928-10652924	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
22	nsv539472	chr8:10618928-10652924	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10610800-10662000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr8:10611200-10624400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:10614400-10634200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:10618000-10634400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:10618600-10628600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:10618600-10634200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:10618800-10634200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:10618800-10634400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:10618800-10636400	Weak transcription	Psoas Muscle	Psoas
10	chr8:10618800-10646200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:10618800-10665200	Weak transcription	Fetal Brain Female	brain
12	chr8:10619000-10624000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr8:10619000-10626000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:10619000-10636400	Weak transcription	HSMM	muscle
15	chr8:10619200-10628200	Weak transcription	K562	blood
16	chr8:10619200-10634200	Weak transcription	Ovary	ovary
17	chr8:10619200-10634400	Weak transcription	HSMMtube	muscle
18	chr8:10619200-10635800	Weak transcription	Brain Angular Gyrus	brain
19	chr8:10619200-10644800	Weak transcription	Small Intestine	intestine
20	chr8:10619200-10656400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr8:10619400-10661600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr8:10619800-10629000	Weak transcription	GM12878-XiMat	blood
23	chr8:10620000-10625000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr8:10620000-10629800	Strong transcription	Primary T cells from cord blood	blood
25	chr8:10620000-10669800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr8:10620200-10623800	Strong transcription	Fetal Stomach	stomach
27	chr8:10620200-10645000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr8:10620400-10634200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:10620600-10630800	Weak transcription	HUVEC	blood vessel
30	chr8:10620800-10623600	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr8:10620800-10623800	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr8:10621200-10623800	Strong transcription	Primary B cells from peripheral blood	blood
33	chr8:10621200-10624000	Strong transcription	Stomach Smooth Muscle	stomach
34	chr8:10621200-10634400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr8:10621200-10662000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr8:10621400-10623600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr8:10621400-10623600	Enhancers	Fetal Brain Male	brain
38	chr8:10621400-10623600	Strong transcription	Fetal Intestine Small	intestine
39	chr8:10621400-10623600	Strong transcription	Lung	lung
40	chr8:10621400-10623600	Strong transcription	Thymus	Thymus
41	chr8:10621400-10623800	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr8:10621400-10623800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr8:10621400-10624000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr8:10621400-10624000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr8:10621400-10624000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr8:10621400-10624200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr8:10621400-10634400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr8:10621400-10656000	Weak transcription	HepG2	liver
49	chr8:10621600-10623600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr8:10621600-10623600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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