Variant report

Variant	rs17779061
Chromosome Location	chr14:65960192-65960193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65878209..65880671-chr14:65959181..65961196,2	MCF-7	breast:
2	chr14:65949225..65952104-chr14:65958180..65961178,2	MCF-7	breast:
3	chr14:65959431..65962264-chr14:65964141..65966912,2	MCF-7	breast:
4	chr14:65960132..65963977-chr14:65971617..65974419,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10129187	0.90[AMR][1000 genomes]
rs10129732	0.81[AMR][1000 genomes]
rs10130560	0.90[AMR][1000 genomes]
rs10133167	0.81[AMR][1000 genomes]
rs10133902	0.81[AMR][1000 genomes]
rs10133903	0.81[AMR][1000 genomes]
rs10135934	0.81[AMR][1000 genomes]
rs10136763	0.81[AMR][1000 genomes]
rs10141293	0.81[AMR][1000 genomes]
rs10145561	0.90[AMR][1000 genomes]
rs10145993	0.81[AMR][1000 genomes]
rs10145996	0.90[AMR][1000 genomes]
rs10146179	0.81[AMR][1000 genomes]
rs10162379	0.81[AMR][1000 genomes]
rs10162474	0.81[AMR][1000 genomes]
rs10162506	0.81[AMR][1000 genomes]
rs10483779	0.81[AMR][1000 genomes]
rs10483784	0.81[AMR][1000 genomes]
rs11158590	1.00[ASN][1000 genomes]
rs12588029	0.81[AMR][1000 genomes]
rs13379147	0.81[AMR][1000 genomes]
rs13379229	0.81[AMR][1000 genomes]
rs17102686	0.81[AMR][1000 genomes]
rs17102757	0.81[AMR][1000 genomes]
rs1813030	0.81[AMR][1000 genomes]
rs1950559	0.81[AMR][1000 genomes]
rs1953419	0.81[AMR][1000 genomes]
rs1958562	1.00[AMR][1000 genomes]
rs1959147	0.81[AMR][1000 genomes]
rs1959148	0.81[AMR][1000 genomes]
rs2002691	0.90[AMR][1000 genomes]
rs2092915	0.81[AMR][1000 genomes]
rs2411814	0.81[AMR][1000 genomes]
rs2411818	0.81[AMR][1000 genomes]
rs2411819	0.81[AMR][1000 genomes]
rs2792213	1.00[ASN][1000 genomes]
rs28373922	0.81[AMR][1000 genomes]
rs28390075	0.81[AMR][1000 genomes]
rs28430347	0.81[AMR][1000 genomes]
rs28694288	0.81[AMR][1000 genomes]
rs28830595	0.81[AMR][1000 genomes]
rs28871950	0.81[AMR][1000 genomes]
rs2898817	0.81[AMR][1000 genomes]
rs2898819	0.81[AMR][1000 genomes]
rs34520181	1.00[ASN][1000 genomes]
rs3783707	0.81[AMR][1000 genomes]
rs3783712	0.81[AMR][1000 genomes]
rs4516142	0.81[AMR][1000 genomes]
rs45549535	0.81[AMR][1000 genomes]
rs57638372	0.81[AMR][1000 genomes]
rs59970730	0.81[AMR][1000 genomes]
rs61746615	1.00[ASN][1000 genomes]
rs7140251	0.81[AMR][1000 genomes]
rs7141874	1.00[ASN][1000 genomes]
rs7145834	0.81[AMR][1000 genomes]
rs7148401	0.81[AMR][1000 genomes]
rs7160505	0.81[AMR][1000 genomes]
rs8003664	0.81[AMR][1000 genomes]
rs8014146	0.81[AMR][1000 genomes]
rs8014189	1.00[ASN][1000 genomes]
rs8015947	0.81[AMR][1000 genomes]
rs9323462	0.90[AMR][1000 genomes]
rs945319	0.81[AMR][1000 genomes]
rs946917	1.00[ASN][1000 genomes]
rs9972109	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65931400-65966200	Weak transcription	Aorta	Aorta
2	chr14:65937400-65961600	Weak transcription	Fetal Intestine Large	intestine
3	chr14:65938400-65963400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr14:65939000-65969400	Weak transcription	Dnd41	blood
5	chr14:65945200-65980000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr14:65949600-65970200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr14:65950000-65965000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr14:65950000-65966000	Weak transcription	Psoas Muscle	Psoas
9	chr14:65950000-65969400	Weak transcription	NH-A	brain
10	chr14:65950000-65973400	Weak transcription	Gastric	stomach
11	chr14:65952600-65963200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:65953800-65970600	Weak transcription	Stomach Mucosa	stomach
13	chr14:65955200-65960600	Weak transcription	Brain Germinal Matrix	brain
14	chr14:65956600-65963000	Weak transcription	Primary T cells from cord blood	blood
15	chr14:65957600-65964200	ZNF genes & repeats	GM12878-XiMat	blood
16	chr14:65957600-65967800	Weak transcription	Small Intestine	intestine
17	chr14:65958000-65960200	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr14:65958200-65960200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:65959400-65963400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr14:65959800-65965200	Weak transcription	Brain Hippocampus Middle	brain
21	chr14:65960000-65960200	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr14:65960000-65960200	Weak transcription	Brain Substantia Nigra	brain
23	chr14:65960000-65962400	Weak transcription	Primary B cells from cord blood	blood

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