Variant report

Variant	rs17783607
Chromosome Location	chr10:50595341-50595342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50590808..50592740-chr10:50594264..50595933,2	K562	blood:
2	chr10:50521945..50524834-chr10:50593428..50595836,2	K562	blood:
3	chr10:50593475..50595915-chr10:50600873..50603743,2	K562	blood:
4	chr10:50593199..50596011-chr10:50596938..50598821,2	K562	blood:
5	chr10:50586997..50589481-chr10:50594678..50597355,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165606	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10508913	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12572851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs12572858	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs17009950	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs17009953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs17176872	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs17176921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17176977	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs17177005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17783577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs3849153	0.86[EUR][1000 genomes]
rs4012237	0.86[EUR][1000 genomes]
rs41301105	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57455400	0.95[EUR][1000 genomes]
rs61848624	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs61848625	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs61848626	0.87[EUR][1000 genomes]
rs61848627	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs61848634	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61848635	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61848637	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61848639	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61848642	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61848644	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61848646	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61850964	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7088781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73311930	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7915692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs7916121	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895377	chr10:50588990-50678212	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50593600-50596200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:50594400-50595400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr10:50594400-50595400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:50594400-50595600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:50594600-50595400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:50594600-50595600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:50594600-50595800	Enhancers	Hela-S3	cervix
8	chr10:50594800-50595400	Enhancers	Osteobl	bone
9	chr10:50594800-50595800	Enhancers	HSMM	muscle
10	chr10:50594800-50598000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:50595200-50595800	Enhancers	Muscle Satellite Cultured Cells	--

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