Variant report
Variant | rs17788825 |
---|---|
Chromosome Location | chr8:62383229-62383230 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10093414 | 0.92[CEU][hapmap];0.88[JPT][hapmap] |
rs10107557 | 0.92[CEU][hapmap] |
rs10504327 | 0.92[CEU][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap] |
rs10504328 | 0.92[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap] |
rs10504329 | 0.85[CEU][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap] |
rs10504330 | 0.85[CEU][hapmap];0.88[JPT][hapmap] |
rs13256758 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs13258160 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
rs13270887 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs16927347 | 0.92[CEU][hapmap];0.81[EUR][1000 genomes] |
rs16927446 | 0.85[CEU][hapmap];0.88[JPT][hapmap] |
rs16927448 | 0.85[CEU][hapmap];0.88[JPT][hapmap] |
rs16927460 | 0.85[CEU][hapmap];0.88[JPT][hapmap] |
rs16927536 | 0.92[CEU][hapmap];0.88[JPT][hapmap] |
rs16927566 | 0.92[CEU][hapmap];0.88[JPT][hapmap] |
rs17198387 | 0.80[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap] |
rs17200413 | 0.92[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap] |
rs17200553 | 0.92[CEU][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap] |
rs17200623 | 0.92[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap] |
rs17201182 | 0.92[CEU][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap] |
rs17201219 | 0.92[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap] |
rs17788873 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17789341 | 0.92[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes] |
rs17790020 | 0.91[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap] |
rs17790471 | 0.92[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap] |
rs17790639 | 0.92[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap] |
rs2279573 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2445 | 0.86[AMR][1000 genomes] |
rs2610520 | 0.87[GIH][hapmap];1.00[JPT][hapmap] |
rs2640232 | 1.00[JPT][hapmap] |
rs2640237 | 1.00[JPT][hapmap] |
rs34736794 | 0.81[EUR][1000 genomes] |
rs35328313 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4487757 | 0.92[CEU][hapmap];0.81[EUR][1000 genomes] |
rs4507756 | 0.86[AMR][1000 genomes] |
rs7012122 | 0.83[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap] |
rs71525451 | 0.81[EUR][1000 genomes] |
rs71525452 | 0.84[EUR][1000 genomes] |
rs7821162 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap] |
rs7830314 | 1.00[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes] |
rs7831797 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
rs7839684 | 0.85[CEU][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv948922 | chr8:61818964-62475097 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
2 | nsv1024432 | chr8:62086247-62898782 | Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
3 | nsv1027742 | chr8:62206883-62613533 | Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
4 | nsv539633 | chr8:62206883-62613533 | Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
5 | nsv1021377 | chr8:62214279-62596721 | Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
6 | nsv539634 | chr8:62214279-62596721 | ZNF genes & repeats Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
7 | nsv1029046 | chr8:62224341-62535277 | Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
8 | nsv932198 | chr8:62336705-62914562 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
9 | nsv521898 | chr8:62364663-62419120 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
10 | esv14468 | chr8:62380573-62387328 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
11 | esv1007319 | chr8:62380595-62387193 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
12 | esv997484 | chr8:62380717-62387328 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
13 | esv2761429 | chr8:62381604-62388093 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:62370600-62386600 | Weak transcription | Fetal Brain Male | brain |
2 | chr8:62382400-62383800 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
3 | chr8:62383000-62383400 | Enhancers | Fetal Brain Female | brain |
4 | chr8:62383200-62384000 | Enhancers | Brain Anterior Caudate | brain |