Variant report

Variant	rs17788873
Chromosome Location	chr8:62383748-62383749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10093414	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs10107557	0.92[CEU][hapmap]
rs10504327	0.92[CEU][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap]
rs10504328	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs10504329	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs10504330	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs13256758	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13258160	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs13270887	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16927347	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs16927446	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs16927448	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs16927460	0.85[CEU][hapmap];0.88[JPT][hapmap]
rs16927536	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs16927566	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs17198387	0.80[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17200413	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs17200553	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs17200623	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs17201182	0.92[CEU][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap]
rs17201219	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs17788825	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17789341	0.92[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.93[AMR][1000 genomes]
rs17790020	0.91[CEU][hapmap];0.88[JPT][hapmap]
rs17790471	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs17790639	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs2279573	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2445	0.86[AMR][1000 genomes]
rs2610520	0.87[GIH][hapmap];1.00[JPT][hapmap]
rs2640232	1.00[JPT][hapmap]
rs2640237	1.00[JPT][hapmap]
rs34736794	0.81[EUR][1000 genomes]
rs35328313	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4487757	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs4507756	0.86[AMR][1000 genomes]
rs7012122	0.83[CEU][hapmap];1.00[MEX][hapmap]
rs71525451	0.81[EUR][1000 genomes]
rs71525452	0.84[EUR][1000 genomes]
rs7821162	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7830314	1.00[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs7831797	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7839684	0.85[CEU][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1027742	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv539633	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1021377	chr8:62214279-62596721	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv539634	chr8:62214279-62596721	ZNF genes & repeats Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1029046	chr8:62224341-62535277	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv521898	chr8:62364663-62419120	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
10	esv14468	chr8:62380573-62387328	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv1007319	chr8:62380595-62387193	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv997484	chr8:62380717-62387328	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv2761429	chr8:62381604-62388093	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62370600-62386600	Weak transcription	Fetal Brain Male	brain
2	chr8:62382400-62383800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr8:62383200-62384000	Enhancers	Brain Anterior Caudate	brain
4	chr8:62383400-62386800	Weak transcription	Fetal Brain Female	brain

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