Variant report

Variant	rs17789626
Chromosome Location	chr4:130053693-130053694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11098995	0.83[AFR][1000 genomes]
rs11098996	1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11723520	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11725174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11726460	0.92[CHB][hapmap];1.00[YRI][hapmap]
rs11728895	1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11728986	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11732348	0.80[AMR][1000 genomes]
rs11735242	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11736968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11737003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11737495	1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11946237	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12500480	0.82[ASN][1000 genomes]
rs12500938	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12501507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501997	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12505162	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12505609	1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12509933	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs13107038	1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs13114398	0.85[CHB][hapmap]
rs13115576	1.00[CHB][hapmap];0.83[AFR][1000 genomes]
rs13124420	1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs13134769	1.00[CHB][hapmap];0.83[AFR][1000 genomes]
rs13142673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13144594	0.81[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13146453	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13148505	1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1446996	1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17014099	1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17014259	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17185515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17351999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790511	0.84[CHB][hapmap]
rs34145504	0.82[ASN][1000 genomes]
rs34359646	0.95[ASN][1000 genomes]
rs34514942	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs34633860	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs35693043	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs35961303	0.83[AFR][1000 genomes]
rs35975200	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3754476	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62316964	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs62316972	0.82[ASN][1000 genomes]
rs62317936	0.83[AFR][1000 genomes]
rs62318662	0.83[AFR][1000 genomes]
rs66737416	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv32790	chr4:130053635-130058173	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130052400-130053800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:130053600-130054200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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