Variant report

Variant	rs17790156
Chromosome Location	chr11:46905318-46905319
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46879162..46881654-chr11:46902746..46905696,2	K562	blood:
2	chr11:46903167..46905489-chr11:46916312..46918025,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10838613	1.00[JPT][hapmap]
rs12575721	0.82[ASN][1000 genomes]
rs12576831	1.00[CEU][hapmap]
rs12576839	1.00[CEU][hapmap]
rs12577603	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12577969	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17197500	1.00[CEU][hapmap]
rs17790246	1.00[CEU][hapmap]
rs17790306	1.00[CEU][hapmap]
rs3136435	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3136456	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs3751097	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4572092	1.00[CEU][hapmap]
rs56356278	0.88[ASN][1000 genomes]
rs56904688	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59613483	0.87[EUR][1000 genomes]
rs61593070	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs61897307	0.82[ASN][1000 genomes]
rs61898461	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61898465	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7926389	0.88[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46868000-46909000	Weak transcription	Small Intestine	intestine
2	chr11:46868600-46917400	Weak transcription	Fetal Brain Male	brain
3	chr11:46868800-46913000	Weak transcription	A549	lung
4	chr11:46875600-46917200	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:46876600-46911400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:46876600-46916600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:46877400-46909200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:46877400-46909200	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:46877400-46912000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:46877400-46912600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:46877600-46919000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:46877800-46912200	Strong transcription	Fetal Stomach	stomach
13	chr11:46877800-46912400	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:46878000-46908200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:46878400-46909600	Strong transcription	Fetal Muscle Leg	muscle
16	chr11:46878400-46922000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:46879000-46909000	Strong transcription	Duodenum Mucosa	Duodenum
18	chr11:46879800-46918200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr11:46880800-46910800	Strong transcription	Fetal Muscle Trunk	muscle
20	chr11:46886000-46921800	Weak transcription	Hela-S3	cervix
21	chr11:46886200-46907000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:46887600-46918600	Weak transcription	NHDF-Ad	bronchial
23	chr11:46892600-46906200	Strong transcription	Brain Inferior Temporal Lobe	brain
24	chr11:46895400-46917400	Weak transcription	NHLF	lung
25	chr11:46896600-46928200	Weak transcription	Fetal Heart	heart
26	chr11:46897400-46907400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:46897400-46921800	Weak transcription	HMEC	breast
28	chr11:46897600-46916800	Weak transcription	Psoas Muscle	Psoas
29	chr11:46897600-46917200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:46898600-46914400	Weak transcription	Colon Smooth Muscle	Colon
31	chr11:46898600-46916600	Weak transcription	Liver	Liver
32	chr11:46898800-46906600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr11:46898800-46916600	Weak transcription	Gastric	stomach
34	chr11:46898800-46920000	Weak transcription	Stomach Mucosa	stomach
35	chr11:46899000-46906200	Weak transcription	Adipose Nuclei	Adipose
36	chr11:46899000-46910400	Weak transcription	NHEK	skin
37	chr11:46899000-46916000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr11:46899600-46914200	Weak transcription	Brain Germinal Matrix	brain
39	chr11:46900400-46914600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:46900800-46907400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr11:46900800-46923400	Weak transcription	Aorta	Aorta
42	chr11:46901000-46906600	Weak transcription	Brain Angular Gyrus	brain
43	chr11:46901000-46906800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr11:46901000-46906800	Weak transcription	Pancreas	Pancrea
45	chr11:46901000-46913400	Weak transcription	Right Ventricle	heart
46	chr11:46901400-46907200	Weak transcription	Fetal Brain Female	brain
47	chr11:46901400-46917400	Weak transcription	NH-A	brain
48	chr11:46902200-46908800	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr11:46902200-46909000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:46902400-46906200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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