Variant report

Variant	rs17790204
Chromosome Location	chr11:46969281-46969282
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46862245..46864106-chr11:46967596..46969972,2	K562	blood:
2	chr11:46968606..46971099-chr11:46973035..46974708,2	MCF-7	breast:
3	chr11:46969116..46970652-chr11:46978768..46980520,2	K562	blood:
4	chr11:46938649..46940580-chr11:46969206..46971125,2	MCF-7	breast:
5	chr11:46960359..46964188-chr11:46967085..46970047,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134569	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10466478	0.82[CHB][hapmap]
rs10501319	0.80[ASN][1000 genomes]
rs10769225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10769226	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10769227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10769228	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10838624	1.00[AFR][1000 genomes]
rs10838635	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10838640	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10838641	0.96[ASN][1000 genomes]
rs10838644	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10838646	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10838652	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10838658	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10838660	0.82[CHB][hapmap]
rs10838662	0.80[ASN][1000 genomes]
rs10838663	0.81[ASN][1000 genomes]
rs11039024	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11039028	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11039033	0.98[ASN][1000 genomes]
rs11039035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11039057	0.90[ASN][1000 genomes]
rs11039074	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs11039080	0.85[ASN][1000 genomes]
rs11039081	0.86[ASN][1000 genomes]
rs11039097	0.82[CHB][hapmap]
rs11039105	0.82[CHB][hapmap]
rs11600292	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11601798	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11602250	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11606992	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11608083	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12417519	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12574410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12796744	0.82[CHB][hapmap]
rs1872896	0.82[CHB][hapmap]
rs2087215	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2290883	1.00[AFR][1000 genomes]
rs2306028	1.00[AFR][1000 genomes]
rs2306033	1.00[AFR][1000 genomes]
rs2306036	0.82[EUR][1000 genomes]
rs2306037	0.86[EUR][1000 genomes]
rs34340483	0.96[ASN][1000 genomes]
rs3922684	0.83[ASN][1000 genomes]
rs4269876	0.83[ASN][1000 genomes]
rs4315028	0.86[ASN][1000 genomes]
rs4394802	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4494268	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4498951	0.83[ASN][1000 genomes]
rs4528282	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4548577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4576779	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4581406	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4587689	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4752815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4752816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4752947	1.00[AFR][1000 genomes]
rs4752951	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4752957	0.82[CHB][hapmap]
rs4752965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4752969	0.80[ASN][1000 genomes]
rs58389391	1.00[AFR][1000 genomes]
rs61896133	0.83[ASN][1000 genomes]
rs61896136	0.83[ASN][1000 genomes]
rs6485715	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6485716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485726	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6485739	0.82[CHB][hapmap]
rs7103581	0.82[CHB][hapmap]
rs7108822	0.92[ASN][1000 genomes]
rs7108902	0.82[CHB][hapmap]
rs7111270	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7112854	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7114683	0.87[ASN][1000 genomes]
rs7121418	0.82[CHB][hapmap]
rs7123632	0.98[ASN][1000 genomes]
rs7124648	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7125807	0.82[CHB][hapmap]
rs7126005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7127741	0.87[ASN][1000 genomes]
rs7128193	0.94[ASN][1000 genomes]
rs7128650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7130947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7929688	0.99[ASN][1000 genomes]
rs7931260	0.82[CHB][hapmap]
rs7935346	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7938169	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7939786	0.99[ASN][1000 genomes]
rs7940441	0.86[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7945315	0.82[CHB][hapmap]
rs7945558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7946709	0.82[CHB][hapmap]
rs7946739	0.96[ASN][1000 genomes]
rs7950753	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs898604	0.81[EUR][1000 genomes]
rs923324	0.95[CHB][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17790204	ACP2	Cis_1M	lymphoblastoid	RTeQTL
rs17790204	DDB2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46958600-46973800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:46958800-46969400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:46959000-46969400	Weak transcription	Colonic Mucosa	Colon
4	chr11:46959000-46969400	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:46959000-46969400	Weak transcription	Pancreas	Pancrea
6	chr11:46959000-46969600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:46959000-46969600	Weak transcription	HSMMtube	muscle
8	chr11:46959000-46973400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:46959000-46973600	Weak transcription	HUVEC	blood vessel
10	chr11:46959000-46973800	Weak transcription	Primary T cells from cord blood	blood
11	chr11:46959000-46973800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:46959000-46973800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr11:46959000-46975600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:46959000-46977000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:46959000-46980000	Weak transcription	Aorta	Aorta
16	chr11:46959000-46980000	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:46959000-46980000	Weak transcription	Ovary	ovary
18	chr11:46959000-46980200	Weak transcription	Primary B cells from cord blood	blood
19	chr11:46959000-46980200	Weak transcription	Gastric	stomach
20	chr11:46959000-46980200	Weak transcription	Lung	lung
21	chr11:46959000-46980200	Weak transcription	Thymus	Thymus
22	chr11:46959000-46981000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr11:46959000-46982200	Weak transcription	Fetal Kidney	kidney
24	chr11:46959000-46982400	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:46959000-46982600	Weak transcription	Fetal Thymus	thymus
26	chr11:46959000-46998600	Weak transcription	Left Ventricle	heart
27	chr11:46959200-46969600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:46959200-46969600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:46959200-46969600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:46959200-46969600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:46959200-46969600	Weak transcription	NHLF	lung
32	chr11:46959200-46969800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:46959200-46969800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr11:46959200-46973400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:46959200-46973600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:46959200-46973600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:46959200-46973600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:46959200-46973800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr11:46959200-46980200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr11:46959200-46980200	Weak transcription	Dnd41	blood
41	chr11:46959200-46985000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:46959200-46990600	Weak transcription	Brain Angular Gyrus	brain
43	chr11:46959200-46990600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr11:46959200-46993800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:46959400-46969600	Weak transcription	Brain Germinal Matrix	brain
46	chr11:46959600-46978800	Weak transcription	Fetal Brain Male	brain
47	chr11:46959600-46980000	Weak transcription	Fetal Brain Female	brain
48	chr11:46960400-46969800	Weak transcription	Brain Anterior Caudate	brain
49	chr11:46962800-46969600	Weak transcription	HSMM	muscle
50	chr11:46962800-46970000	Weak transcription	Fetal Stomach	stomach

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