Variant report

Variant	rs17790336
Chromosome Location	chr11:47127549-47127550
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47122507..47125305-chr11:47125314..47127703,3	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12573962	1.00[CHB][hapmap]
rs12574558	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576839	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12578030	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17197500	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17197619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17197710	0.83[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17790246	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[TSI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790306	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790342	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790390	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736101	0.82[JPT][hapmap]
rs3816724	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4572092	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4647713	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4647736	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs55968738	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57012996	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57964319	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59689332	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60041842	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60088916	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60174717	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60201196	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60335739	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61142746	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61896120	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896121	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896122	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896124	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896125	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896126	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896131	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896132	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897776	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897777	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897782	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897784	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897786	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61897788	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897791	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61897843	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61897851	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897852	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897853	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897854	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61897855	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61897856	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61897858	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61899284	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61899285	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61899293	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61899294	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47121200-47130600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:47121200-47132600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:47121400-47129000	Weak transcription	Hela-S3	cervix
4	chr11:47121600-47140200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:47122400-47140400	Weak transcription	Pancreas	Pancrea
6	chr11:47123000-47132600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:47123600-47127600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:47124600-47128200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:47124600-47132800	Weak transcription	Thymus	Thymus
10	chr11:47124600-47133000	Weak transcription	Fetal Thymus	thymus
11	chr11:47124600-47159000	Weak transcription	Primary T cells from cord blood	blood
12	chr11:47125000-47128400	Enhancers	Brain Anterior Caudate	brain
13	chr11:47125200-47129400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:47125200-47132400	Enhancers	Fetal Muscle Leg	muscle
15	chr11:47125400-47128400	Enhancers	Brain Substantia Nigra	brain
16	chr11:47125400-47133400	Enhancers	Fetal Lung	lung
17	chr11:47125600-47128400	Enhancers	Brain Hippocampus Middle	brain
18	chr11:47125600-47129200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:47125800-47128200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:47125800-47128200	Enhancers	Brain Cingulate Gyrus	brain
21	chr11:47125800-47128800	Enhancers	Fetal Kidney	kidney
22	chr11:47125800-47129000	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr11:47125800-47129200	Enhancers	Duodenum Mucosa	Duodenum
24	chr11:47125800-47129400	Enhancers	Fetal Intestine Small	intestine
25	chr11:47126000-47128400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:47126000-47128600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr11:47126200-47127600	Weak transcription	Fetal Brain Male	brain
28	chr11:47126200-47127800	Enhancers	HSMMtube	muscle
29	chr11:47126400-47128000	Weak transcription	Fetal Stomach	stomach
30	chr11:47126400-47128200	Weak transcription	Small Intestine	intestine
31	chr11:47126400-47128400	Weak transcription	Brain Germinal Matrix	brain
32	chr11:47126400-47132000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:47126600-47127600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:47126600-47128000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:47126600-47130800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:47126600-47133200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:47126800-47128200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:47126800-47128600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:47126800-47129400	Weak transcription	Fetal Brain Female	brain
40	chr11:47126800-47129600	Weak transcription	NHLF	lung
41	chr11:47126800-47130600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:47126800-47130600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:47126800-47130600	Weak transcription	NHDF-Ad	bronchial
44	chr11:47126800-47130800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr11:47126800-47130800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:47126800-47130800	Weak transcription	NH-A	brain
47	chr11:47126800-47131000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:47126800-47131200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr11:47127000-47127600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:47127000-47128000	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links