Variant report

Variant	rs17790719
Chromosome Location	chr5:94963181-94963182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12189300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv598959	chr5:94956345-94963181	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17790719	SLC10A2	trans	lymphoblastoid	seeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94957800-94963600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:94957800-94967200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:94958200-94964600	Weak transcription	Adipose Nuclei	Adipose
4	chr5:94958200-94967200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:94958400-94963400	Weak transcription	Fetal Intestine Large	intestine
6	chr5:94958400-94963400	Weak transcription	Fetal Intestine Small	intestine
7	chr5:94958400-94963400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:94959800-94967800	Weak transcription	Pancreas	Pancrea
9	chr5:94960000-94967000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:94960200-94966000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:94960600-94966200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr5:94961000-94966400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:94961000-94966600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr5:94961200-94966200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr5:94961400-94967400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr5:94962200-94963400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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