Variant report

Variant	rs17794771
Chromosome Location	chr13:70345753-70345754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:70344508..70346894-chr13:70348919..70351044,2	K562	blood:
2	chr13:70343892..70346345-chr13:113863086..113865250,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139842	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs11148828	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11618330	0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs11618357	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap]
rs11619836	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12430131	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12583014	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12584126	0.89[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap]
rs12584317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs12585046	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1593176	1.00[JPT][hapmap]
rs1593177	0.81[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];0.86[LWK][hapmap];0.85[MKK][hapmap];0.86[TSI][hapmap]
rs17085396	0.89[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs17727950	0.93[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17728004	0.82[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.87[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs17728354	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1890045	0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs1895569	0.83[JPT][hapmap]
rs2059299	0.94[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs2325232	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs2325234	0.82[ASW][hapmap];0.90[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs3909551	0.82[CHB][hapmap]
rs4304920	0.87[JPT][hapmap]
rs4344608	0.88[ASN][1000 genomes]
rs57713566	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60137040	0.89[ASN][1000 genomes]
rs66985863	0.99[ASN][1000 genomes]
rs67089042	0.88[ASN][1000 genomes]
rs67848439	0.88[ASN][1000 genomes]
rs67934724	0.88[ASN][1000 genomes]
rs73210502	0.89[ASN][1000 genomes]
rs73212516	0.88[ASN][1000 genomes]
rs73212517	0.82[ASN][1000 genomes]
rs7986686	1.00[JPT][hapmap]
rs7987637	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7987960	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7988385	0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs7991639	0.90[CEU][hapmap]
rs7992119	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs9317839	0.81[CHB][hapmap]
rs9317844	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9317845	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs9529646	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs9564595	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs9564596	0.81[CHB][hapmap];0.80[TSI][hapmap]
rs9564597	0.80[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.81[TSI][hapmap]
rs9564601	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs9564604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9564607	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap]
rs9564608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9564609	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9564610	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs9564614	0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs9564618	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9564619	0.92[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs9564620	0.88[ASN][1000 genomes]
rs9564623	0.94[JPT][hapmap]
rs9572262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs9572268	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9572269	0.99[ASN][1000 genomes]
rs9572272	1.00[JPT][hapmap]
rs9572273	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs9572284	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9572285	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9572286	0.82[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.83[MKK][hapmap];0.92[TSI][hapmap]
rs9572287	0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs9572288	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs9572289	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9572291	0.84[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap]
rs9572294	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9572295	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9599509	0.90[CEU][hapmap];0.82[CHB][hapmap]
rs9634958	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9634959	0.88[ASN][1000 genomes]
rs9634960	0.88[ASN][1000 genomes]
rs993138	0.86[ASN][1000 genomes]
rs993139	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs993140	0.84[ASN][1000 genomes]
rs993141	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045844	chr13:70038096-70405435	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv900482	chr13:70186605-70383876	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv1837120	chr13:70209507-70425056	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv482460	chr13:70240630-70419347	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv900483	chr13:70254555-70464234	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv900484	chr13:70298300-70383876	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv900485	chr13:70302991-70383876	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv900486	chr13:70302991-70421896	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv832643	chr13:70324440-70486661	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv900487	chr13:70327693-70548643	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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