Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDYL2-6	chr16:80188950-80189904	ENSG00000259867.1

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12325572	1.00[ASN][1000 genomes]
rs16952553	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952610	0.80[EUR][1000 genomes]
rs16952612	0.80[EUR][1000 genomes]
rs16952615	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952617	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952674	1.00[ASN][1000 genomes]
rs17734628	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17734742	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17735114	1.00[ASN][1000 genomes]
rs17794680	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17794789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17796486	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17797596	1.00[ASN][1000 genomes]
rs17797992	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1871208	0.84[EUR][1000 genomes]
rs4889113	0.88[EUR][1000 genomes]
rs4889114	0.84[EUR][1000 genomes]
rs4889117	0.80[EUR][1000 genomes]
rs4889118	0.80[EUR][1000 genomes]
rs61540470	0.80[EUR][1000 genomes]
rs7184281	1.00[ASN][1000 genomes]
rs7192068	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197361	1.00[ASN][1000 genomes]
rs72811567	1.00[ASN][1000 genomes]
rs74041375	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9934115	0.88[EUR][1000 genomes]
rs9941114	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80186400-80191800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr16:80186400-80191800	Weak transcription	NH-A	brain
3	chr16:80186600-80191200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr16:80186600-80191600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr16:80186600-80191800	Weak transcription	Osteobl	bone
6	chr16:80186600-80192600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr16:80186600-80197600	Weak transcription	HSMMtube	muscle

Quick Search: