Variant report

Variant	rs17796027
Chromosome Location	chr8:95248519-95248520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95244367..95248911-chr8:95252094..95255731,6	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10216999	0.85[CEU][hapmap]
rs10504935	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11991314	0.80[EUR][1000 genomes]
rs11998365	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs1481431	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16916621	0.85[EUR][1000 genomes]
rs17734778	0.82[EUR][1000 genomes]
rs1973221	0.96[EUR][1000 genomes]
rs73268105	0.80[EUR][1000 genomes]
rs73268123	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73268124	0.85[EUR][1000 genomes]
rs73268128	0.83[EUR][1000 genomes]
rs73268136	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73268139	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73268141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024907	chr8:95188944-95296378	Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv539677	chr8:95188944-95296378	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1024893	chr8:95189085-95293557	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1022489	chr8:95212660-95273564	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv539679	chr8:95212660-95273564	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1035036	chr8:95213244-95283014	Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95246000-95253200	Weak transcription	Fetal Brain Male	brain
2	chr8:95246800-95254000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:95247000-95254000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:95247200-95248600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:95247200-95252200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:95247200-95252200	Weak transcription	A549	lung
7	chr8:95247200-95252400	Weak transcription	NHLF	lung
8	chr8:95247200-95252600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr8:95247200-95253600	Weak transcription	Left Ventricle	heart
10	chr8:95247200-95253600	Weak transcription	Right Atrium	heart
11	chr8:95247200-95262400	Weak transcription	Gastric	stomach
12	chr8:95247400-95252000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:95247400-95252200	Weak transcription	Colon Smooth Muscle	Colon
14	chr8:95247400-95252200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr8:95247400-95252200	Weak transcription	Fetal Heart	heart
16	chr8:95247400-95252200	Weak transcription	Fetal Intestine Small	intestine
17	chr8:95247400-95252400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:95247400-95252400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr8:95247400-95252600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr8:95247600-95249000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr8:95247600-95253000	Weak transcription	Fetal Intestine Large	intestine
22	chr8:95247600-95253200	Weak transcription	HMEC	breast
23	chr8:95247800-95249000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr8:95247800-95253200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr8:95247800-95256800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr8:95248200-95262200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:95248400-95248600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr8:95248400-95248800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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