Variant report

Variant	rs17796669
Chromosome Location	chr14:85733942-85733943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr14:85733391-85733992	U2OS	brain:	n/a	n/a
2	KAP1	chr14:85733419-85733957	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
RNU3P3	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10134214	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10220585	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10498582	0.83[EUR][1000 genomes]
rs11847747	0.81[EUR][1000 genomes]
rs12050312	0.96[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12435232	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12435282	0.84[ASN][1000 genomes]
rs12435574	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12879855	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1375575	0.83[EUR][1000 genomes]
rs1530325	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1839313	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1867082	0.82[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2029135	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2053514	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2372881	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2372886	0.83[EUR][1000 genomes]
rs2888433	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34155469	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34662815	0.99[EUR][1000 genomes]
rs35048084	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4904242	0.97[EUR][1000 genomes]
rs7151509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7160419	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8011992	0.83[EUR][1000 genomes]
rs8022384	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8022603	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs895909	0.91[EUR][1000 genomes]
rs961166	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422273	chr14:85703149-85767292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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