Variant report

Variant	rs1779749
Chromosome Location	chr6:64144480-64144481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64144471..64145931-chr6:64200574..64201618,46	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1464865	0.92[ASN][1000 genomes]
rs1464866	0.92[ASN][1000 genomes]
rs1608812	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1628449	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1631333	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711903	0.84[EUR][1000 genomes]
rs1711919	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711927	0.92[ASN][1000 genomes]
rs1711928	0.92[ASN][1000 genomes]
rs1723497	0.92[ASN][1000 genomes]
rs1723498	1.00[ASN][1000 genomes]
rs1741802	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741805	0.92[ASN][1000 genomes]
rs1779745	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1857565	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2622291	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2622306	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2622308	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2677028	0.92[ASN][1000 genomes]
rs2753064	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2753065	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2753074	0.92[ASN][1000 genomes]
rs2800019	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2800020	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2800021	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2800024	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2800025	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2800029	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824373	0.92[ASN][1000 genomes]
rs824374	0.92[ASN][1000 genomes]
rs824375	0.92[ASN][1000 genomes]
rs824376	0.92[ASN][1000 genomes]
rs824377	0.92[ASN][1000 genomes]
rs824378	0.92[ASN][1000 genomes]
rs824379	0.92[ASN][1000 genomes]
rs824388	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs850830	0.92[ASN][1000 genomes]
rs860349	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64133400-64144600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:64139800-64145200	Enhancers	HepG2	liver
3	chr6:64140200-64144800	Weak transcription	A549	lung
4	chr6:64143200-64144600	Weak transcription	Fetal Intestine Large	intestine

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