The 2.0 version of rSNPBase

Variant report

Variant rs17799909
Chromosome Location chr18:24110159-24110160
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:24083800-24111800 Weak transcription HMEC breast
2 chr18:24092200-24123400 Weak transcription Fetal Intestine Small intestine
3 chr18:24094800-24111600 Weak transcription NHEK skin
4 chr18:24095000-24113000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
5 chr18:24096800-24118600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr18:24100800-24124400 Weak transcription Fetal Stomach stomach
7 chr18:24101200-24120200 Weak transcription Left Ventricle heart
8 chr18:24102000-24120400 Weak transcription Psoas Muscle Psoas
9 chr18:24105800-24120200 Weak transcription Right Atrium heart
10 chr18:24106000-24111600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr18:24106800-24111600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr18:24107200-24111600 Weak transcription H9 Cell Line embryonic stem cell
13 chr18:24107200-24112400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
14 chr18:24107200-24112400 Weak transcription Pancreas Pancrea
15 chr18:24107200-24118800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr18:24107200-24118800 Weak transcription Esophagus oesophagus
17 chr18:24107200-24120200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr18:24107200-24125600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr18:24107400-24111600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
20 chr18:24107400-24111600 Weak transcription HUES6 Cell Line embryonic stem cell
21 chr18:24107400-24111800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr18:24107600-24112600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
23 chr18:24107800-24111600 Weak transcription ES-I3 Cell Line embryonic stem cell
24 chr18:24107800-24111600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
25 chr18:24107800-24112800 Weak transcription Brain Hippocampus Middle brain
26 chr18:24108000-24113000 Weak transcription Brain Substantia Nigra brain
27 chr18:24108200-24111400 Weak transcription HUES48 Cell Line embryonic stem cell
28 chr18:24108200-24111800 Weak transcription ES-WA7 Cell Line embryonic stem cell
29 chr18:24108400-24111400 Weak transcription iPS-20b Cell Line embryonic stem cell
30 chr18:24108400-24119400 Weak transcription Brain Cingulate Gyrus brain
31 chr18:24108600-24111600 Weak transcription H1 Cell Line embryonic stem cell
32 chr18:24108600-24112800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
33 chr18:24108600-24116600 Weak transcription Brain Anterior Caudate brain
34 chr18:24108800-24111400 Weak transcription iPS-15b Cell Line embryonic stem cell
35 chr18:24108800-24123600 Weak transcription GM12878-XiMat blood
36 chr18:24109000-24110200 Enhancers A549 lung
37 chr18:24109000-24111600 Weak transcription HUES64 Cell Line embryonic stem cell
38 chr18:24109200-24112400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr18:24109200-24124400 Weak transcription Ovary ovary
40 chr18:24109400-24110800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr18:24109400-24111800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr18:24109400-24111800 Weak transcription Brain Inferior Temporal Lobe brain
43 chr18:24109400-24116200 Weak transcription Placenta Amnion Placenta Amnion
44 chr18:24109400-24125400 Weak transcription NH-A brain
45 chr18:24109600-24111800 Weak transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015