Variant report

Variant	rs17819945
Chromosome Location	chr11:86428024-86428025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86419484..86423460-chr11:86424969..86430597,4	MCF-7	breast:
2	chr11:86424145..86428072-chr11:86487493..86490435,3	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10501629	1.00[CHB][hapmap]
rs10898527	1.00[ASN][1000 genomes]
rs10898528	1.00[ASN][1000 genomes]
rs10898531	1.00[CHB][hapmap]
rs10898535	1.00[CHB][hapmap]
rs11234753	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11234760	1.00[ASN][1000 genomes]
rs11234761	1.00[ASN][1000 genomes]
rs11234765	1.00[CHB][hapmap]
rs11234767	1.00[CHB][hapmap]
rs11234768	1.00[CHB][hapmap]
rs11234778	1.00[CHB][hapmap]
rs11234798	1.00[CHB][hapmap]
rs11234799	1.00[CHB][hapmap]
rs11234806	1.00[CHB][hapmap]
rs11234818	1.00[CHB][hapmap]
rs11602353	1.00[CHB][hapmap]
rs11607392	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11608167	1.00[CHB][hapmap]
rs12360547	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12786875	1.00[CHB][hapmap]
rs12787853	1.00[CHB][hapmap]
rs12791740	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12793595	1.00[CHB][hapmap]
rs12805405	1.00[CHB][hapmap]
rs17159941	1.00[CHB][hapmap]
rs17758195	1.00[CHB][hapmap]
rs17758206	1.00[CHB][hapmap]
rs17758334	1.00[CHB][hapmap]
rs17758376	1.00[CHB][hapmap]
rs17758400	1.00[CHB][hapmap]
rs17820139	1.00[CHB][hapmap]
rs1815753	1.00[CHB][hapmap]
rs2000538	1.00[CHB][hapmap]
rs2105587	1.00[CHB][hapmap]
rs34343472	1.00[ASN][1000 genomes]
rs6592313	1.00[CHB][hapmap]
rs6592314	1.00[CHB][hapmap]
rs7105597	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7108254	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7128682	1.00[CHB][hapmap]
rs7128805	1.00[CHB][hapmap]
rs71465652	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86386600-86431000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:86407000-86451600	Weak transcription	Left Ventricle	heart
3	chr11:86408000-86431400	Weak transcription	Aorta	Aorta
4	chr11:86411000-86429000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:86420000-86428600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:86420400-86428800	Weak transcription	HSMM	muscle
7	chr11:86420600-86428800	Weak transcription	NHDF-Ad	bronchial
8	chr11:86422600-86428800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:86424200-86449800	Weak transcription	Pancreas	Pancrea
10	chr11:86425000-86429000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:86425000-86430800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:86425000-86434600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:86425800-86429200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:86426000-86429000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:86427000-86430800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:86427200-86428600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:86427200-86429000	Weak transcription	HSMMtube	muscle
18	chr11:86427800-86431000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:86428000-86428200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:86428000-86431200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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