Variant report

Variant	rs17821202
Chromosome Location	chr15:58598516-58598517
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58595612..58601278-chr15:58601529..58605992,7	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1430308	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16953374	0.80[EUR][1000 genomes]
rs17240713	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17821177	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17821184	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17821190	0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs1850272	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28430899	0.86[ASN][1000 genomes]
rs55819716	0.89[ASN][1000 genomes]
rs55901481	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56140064	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56152791	0.89[EUR][1000 genomes]
rs56247511	0.89[EUR][1000 genomes]
rs56302476	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73418322	0.80[EUR][1000 genomes]
rs73418343	0.82[EUR][1000 genomes]
rs73418374	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv904266	chr15:58580921-58689187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58587400-58598800	Weak transcription	Fetal Kidney	kidney
2	chr15:58590200-58602400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:58592000-58598600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:58595000-58598800	Weak transcription	Adipose Nuclei	Adipose
5	chr15:58595000-58598800	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:58595200-58598600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:58595400-58598800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:58595600-58599000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr15:58595800-58598600	Weak transcription	Primary T cells from cord blood	blood
10	chr15:58595800-58598800	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr15:58595800-58599000	Weak transcription	Thymus	Thymus
12	chr15:58595800-58601800	Weak transcription	K562	blood
13	chr15:58595800-58605000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr15:58596000-58599200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr15:58597200-58600600	Enhancers	Liver	Liver
16	chr15:58597200-58600800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:58598200-58600600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:58598400-58599000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:58598400-58599400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:58598400-58600000	Enhancers	Fetal Thymus	thymus
21	chr15:58598400-58600200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:58598400-58600200	Enhancers	HepG2	liver
23	chr15:58598400-58600800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr15:58598400-58600800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:58598400-58601000	Enhancers	NHDF-Ad	bronchial

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