Variant report

Variant	rs17823686
Chromosome Location	chr20:24433104-24433105
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55642683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6049703	1.00[EUR][1000 genomes]
rs6114709	0.85[EUR][1000 genomes]
rs6114710	0.85[EUR][1000 genomes]
rs6114728	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[EUR][1000 genomes]
rs6114731	0.85[EUR][1000 genomes]
rs68032297	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24426600-24435800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr20:24427400-24436600	Weak transcription	Brain Hippocampus Middle	brain
3	chr20:24429000-24433200	Weak transcription	Gastric	stomach
4	chr20:24429000-24434200	Weak transcription	Dnd41	blood
5	chr20:24429400-24434400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr20:24429800-24434400	Weak transcription	Fetal Thymus	thymus
7	chr20:24430000-24434200	Weak transcription	Primary T cells from cord blood	blood
8	chr20:24431800-24433200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr20:24432000-24435600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr20:24432400-24439200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr20:24432600-24435600	Weak transcription	Fetal Brain Male	brain
12	chr20:24432600-24437200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr20:24433000-24433600	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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