Variant report

Variant	rs17826026
Chromosome Location	chr14:65655435-65655436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1123493	0.81[ASN][1000 genomes]
rs12890679	0.81[ASN][1000 genomes]
rs4899168	0.84[ASN][1000 genomes]
rs55839896	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56116751	0.81[ASN][1000 genomes]
rs8015078	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17826026	TRMT5	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65641600-65658200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:65647800-65659800	Weak transcription	Fetal Intestine Large	intestine
3	chr14:65651400-65658200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:65652400-65655800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:65654600-65655600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:65654800-65660600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr14:65655200-65655600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr14:65655200-65658800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:65655400-65655600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr14:65655400-65655600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr14:65655400-65658400	Weak transcription	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links